BAC Information

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BAC

Clone NameMSMg01-352L15
Chromosome2 (Build37)
Map Location 37,314,505 - 37,314,928
singlet/doubletsinglet
Overlap geneRabgap1
Upstream geneOlfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26
Downstream geneGpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352L15.T7 (MSMg01no352_l15.b1)MSMg01-352L15.TJ (MSMg01no352_l15.g1)
ACCAG463782AG463783
length775759
length of high quality
(start - end)		354 (72 - 425)424 (78 - 501)
definitionCHROMAT_FILE: MSMg01no352_l15.b1 PHD_FILE: MSMg01no352_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:22 2005CHROMAT_FILE: MSMg01no352_l15.g1 PHD_FILE: MSMg01no352_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGGATTGACATTGTGTGAATTTGGTTTTATCATGGAATA
TTTTGGTTTCTTCATATATGGTAATTGAGAGTTTGGCTGGATATAATAGC
CTGGGCTGGCATTTGTGCTCTCTTGGGGTCTGTATAACATCTGTCCAGGA
TCTTCTGTCCTTCATAATCTCTGGTGAAAAGTCTGGTGTAATTCTAATAG
ACCTGCCTTTATATGTTACTTGGCCCTTTTCCCTTACTGCTTTTAATATT
CTATCTTTATTTAGTGCATTTGTTGTTCTGATTATTATGTGTCCAGAGGA
ATTTCTTTTCTGGAGCAGTCTATTTGGAGTTCTGTAGTCTTCTTGTATGT
TCACGGGCATATCTTTCTTTACGTTTGGGAAGCTTTCTTCTATAACGCTG
TTGAAGATATTTGCTGGCCCTTTAAGTTGAAAATCTTCATTCCTATCTAC
TCTCATCATCTATATTTCTTGTGCTTCCCATTGTTGTTCCGTACTTCCCA
TACGCTTTCGTTCTTCCATTCCTTTGTAACCTGCATTTCCCTTTGCACGG
TGTGTTAACCCCTCCCCCACGCCACCTTTCCCACACTTAAAATTTATCTC
TTTCCTTTTTTTTCTCCCTCCCCATTTTACATTTTTTATCCCCATCGCCT
CTTTAATTGTCTTCCTTTACCATTTTCCCCCATCCCACTTCTTTATTTCT
CTCCTCTTCCCCCCACCCTCTATTT

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGGACCATAGACACTCATCA
CTTCCTTCTTACTCGCCACCATTTTTTGTTGCTCAGTAAGTACTATGTTG
TTCAATAAGCACCTAGGTGTTCTGCTCTTTTCCGAGCTGTATCTCACTCC
TTGGTATCCCTATCTCCATTCTTTATGTATTCCAGTTCAGGAACTACAAC
AGAAAGTAACAAGACAAGACTCAAAAGATACCATAGCAGGCCAATTCCCA
CATGATTTGTATCTTTTAAAGTAAAATAAGTACTGGGAGATGGGTCAGCA
GCAAAAGTCACTATTGCCATGACAATTACAAGGATCTGAATTCAGATCCT
TATGACCCATTTTAAAGAACAGAAGCCAGGCAATGTGGCATGTGCCCACA
ACCCCAACACCAGGGTGTGGATGAAGAATACTGAAGCTCACTGACCAGGT
AACTTAACTGATGAGCTTCAGATTCAGCAAGAGAACCTACCTTATAACAT
GAATGCAAGAAAGCAAATGAGGACAAACCCCCATGTCCACCTCCAGCTTT
CATAGGCATATGGGTTCCTCCTACCCCCCAAAACTAGATAAGGTTTTTGG
CGGGGTTCTTTTACAAAAAATGGGTTTAAAAAAGTGTCGTCTTGTTTTTT
ACCTCCCTTCCCTAACTACCCACCCCAATCCTCATCTGGCTTCCCTTTTT
TTTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_l15.g1 MSMg01no352_l15.g1 CHROMAT_FILE:
MSMg01no352_l15.g1 PHD_FILE: MSMg01no352_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:22 2005
         (424 letters)



>mm_chr2_37314472_37315295
          Length = 824

 Score =  804 bits (416), Expect = 0.0
 Identities = 422/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttggaccatagacactcatcacttccttcttactcgccaccattttttgttgctcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttttggaccatagacactcatcacttccttcttactcgccaccattttttgttgctcagt 398

                                                                       
Query: 61  aagtactatgttgttcaataagcacctaggtgttctgctcttttccgagctgtatctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aagtactatgttgttcaataagcacctaggtgttctgctcttttccgagctgtatctcac 338

                                                                       
Query: 121 tccttggtatccctatctccattctttatgtattccagttcaggaactacaacagaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 337 tccttggtatccctatctccattctttatgtattccagttcagtaactacaacagaaagt 278

                                                                       
Query: 181 aacaagacaagactcaaaagataccatagcaggccaattcccacatgatttgtatctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aacaagacaagactcaaaagataccatagcaggccaattcccacatgatttgtatctttt 218

                                                                       
Query: 241 aaagtaaaataagtactgggagatgggtcagcagcaaaagtcactattgccatgacaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aaagtaaaataagtactgggagatgggtcagcagcaaaagtcactattgccatgacaatt 158

                                                                       
Query: 301 acaaggatctgaattcagatccttatgacccattttaaagaacagaagccaggcaatgtg 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 acaaggatatgaattcagatccttatgacccattttaaagaacagaagccaggcaatgtg 98

                                                                       
Query: 361 gcatgtgcccacaaccccaacaccagggtgtggatgaagaatactgaagctcactgacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  gcatgtgcccacaaccccaacaccagggtgtggatgaagaatactgaagctcactgacca 38

               
Query: 421 ggta 424
           ||||
Sbjct: 37  ggta 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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