TTCTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTGATAGTTCCTAATAAATGCCCTACACAAATTTGA
TTTAGGAGGATAATACGTCAACATGAGTTTTATAAGTCTGTTACATGGAG
ATATATACCCACACTTTATATATACAGAAAATACACAGCTATCATCTTAG
TGAATTGGAAAAGTATGATAGCATTTTCTCTAAAATTAGGAACAAATCAA
GAGTGCTTACTCTCACAGATGTAATCCAAACATGATGATCAAATTTTAGC
TGGAACAATTAGAAAGGAGAGTGTATATATTCAAATTAATATATGTTGGT
AGATATAATTTTATATGTGGGGGAAAAACCACTGCTAAGAGAATATTAGA
AATGACAAACCAGTTTAGGAAAGTCGTAGTTCTATGATGTGAAAGTGGAA
AGGCAGATTCTGGGAGTAGAAGATGGGGAACAGGGAATATAATGGAGAGT
CAACCCAAATTAAATTAAGTATGAATGAAATCTCATAAAAAACCTGCTGC
GGTGCCAGCTAATTTAACAAGAAGATAACACATAGATTCGCTATACATTT
CTATCCAGCTTATTTTTGCAACTTAAAAAACTCCCTAATACCCTAAAATT
AAGCCCAGCCCCACATTCCCTCTTTGTCCTTGTACCACGGTCATAAAATC
ACATTTTCCCCCCCCCTTATCCCATTATAACTTGTGCCTTTCGTCCCACT
ACCTTCACCCGGCCTCCGGCTTTCTCTCTT

NTTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCGAAGTTATCCAAA
AAGAGTGCATCTGATAAGGGCAGACTTCTGTAAATTGACCAATTTGGCAG
CAAGAACAAAGAACATGCCAGAATATTCCTGAGATAGAGATTCATATGTC
ATTTCATGTCTATAGCACTGCCCATACTGGCAGTGGCCCACTCTACCACC
AGGAGAGAAGAGGCAGATGTTGTTTATCTTTTGCTGTGGTTTCTGATATT
TGTTGTGATTTAGCATCATTGGCTACCCTCAACCATTTTTTCCCCTAGTT
CTTGAGTCTGTTGACAAATTGCTGTTTAGAATGTAGTAAGAGGGGCTACC
AGAAAAGCCCAGTGGTAGAGCACCCACATTAAAGGTATGAGACCTTGCAT
ACAATCTTCAGCACTAATGTGTGCGTGTGCGCGTGTGCGTTCTTGCCCCT
ATTACTTTTTCTCTTTTCCCCCCCCCTTTCCACTTCCCCTTTTTTTTTCC
CCTTTTCCCCCCTTTCACACCCCTTCCCTTCCTTTTCTCTCCCCTTCCTT
CCCCTTTTTTCCCCTTTTCCCCTTTCCCCTTTTTTACCCCATATCTTTTT
CCCCCTTCCTTTCCCTTTTTATTCCCCCTTTTTCCCTTTTTTCTCCCTCT
CCCTTACCCCTTTTCCCCCTTTTTTTCCCTTCTTTCTTTCCCCTTTTTTT
TCCCCTTATTTCCCTTTCCCATTTCTTTCCTCCCTTCTCTTCCN

Query= MSMg01no353_f08.b1 MSMg01no353_f08.b1 CHROMAT_FILE:
MSMg01no353_f08.b1 PHD_FILE: MSMg01no353_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:10 2005
         (431 letters)



>mm_chr2_142170514_142171344
          Length = 831

 Score =  696 bits (360), Expect = 0.0
 Identities = 363/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 68  acatgagttttataagtctgttacatggagatatatacccacactttatatatacagaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 831 acatgagttttataagtctgttacatggagatatatacccacactttatatatacggaaa 772

                                                                       
Query: 128 atacacagctatcatcttagtgaattggaaaagtatgatagcattttctctaaaattagg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 atacacagctatcatcttagtgaattggaaaagtatgatagcattttctctaaaattagg 712

                                                                       
Query: 188 aacaaatcaagagtgcttactctcacagatgtaatccaaacatgatgatcaaattttagc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aacaaatcaagagtgcttactctcacagatgtaatccaaacatgatgatcaaattttagc 652

                                                                       
Query: 248 tggaacaattagaaaggagagtgtatatattcaaattaatatatgttggtagatataatt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tggaacaattagaaaggagagtgtatatattcaaattaatatatgttggtagatataatt 592

                                                                       
Query: 308 ttatatgtgggggaaaaaccactgctaagagaatattagaaatgacaaaccagtttagga 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttatatgtgggggaaaaaccactgctaagagaatattagaaatgacaaaccagtttagga 532

                                                                       
Query: 368 aagtcgtagttctatgatgtgaaagtggaaaggcagattctgggagtagaagatggggaa 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aagtcgtagttctatgatgtgaaagtggaaaggcagattctgggagtagaagatggggaa 472

               
Query: 428 cagg 431
           ||||
Sbjct: 471 cagg 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_f08.g1 MSMg01no353_f08.g1 CHROMAT_FILE:
MSMg01no353_f08.g1 PHD_FILE: MSMg01no353_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:11 2005
         (351 letters)



>mm_chr2_142065876_142066626
          Length = 751

 Score =  663 bits (343), Expect = 0.0
 Identities = 349/351 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcgaagttatccaaaaagagtgcatctgataagggcagacttctgtaaattgaccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcgaagttatccaaaaagagtgcatctgataagggcagacttctgtaaattgaccaat 260

                                                                       
Query: 61  ttggcagcaagaacaaagaacatgccagaatattcctgagatagagattcatatgtcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggcagcaagaacaaagaacatgccagaatattcctgagatagagattcatatgtcatt 320

                                                                       
Query: 121 tcatgtctatagcactgcccatactggcagtggcccactctaccaccaggagagaagagg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatggctatagcactgcccatactggcagtggcccactctaccaccaggagagaagagg 380

                                                                       
Query: 181 cagatgttgtttatcttttgctgtggtttctgatatttgttgtgatttagcatcattggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagatgttgtttatcttttgctgtggtttctgatatttgttgtgatttagcatcattggc 440

                                                                       
Query: 241 taccctcaaccattttttcccctagttcttgagtctgttgacaaattgctgtttagaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccctcaaccattttttcccctagttcttgagtctgttgacaaattgctgtttagaatg 500

                                                              
Query: 301 tagtaagaggggctaccagaaaagcccagtggtagagcacccacattaaag 351
           ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtaagtggggctaccagaaaagcccagtggtagagcacccacattaaag 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)