BAC Information

Click to search

BAC

Clone NameMSMg01-353N09
Chromosome2 (Build37)
Map Location 119,610,057 - 119,790,956
singlet/doubletdoublet
Overlap geneRpap1, Tyro3, 6330405D24Rik, LOC625403, Mga
Upstream geneDisp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk
Downstream geneMapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353N09.T7 (MSMg01no353_n09.b1)MSMg01-353N09.TJ (MSMg01no353_n09.g1)
ACCAG464615AG464616
length753756
length of high quality
(start - end)		559 (50 - 608)520 (80 - 599)
definitionCHROMAT_FILE: MSMg01no353_n09.b1 PHD_FILE: MSMg01no353_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:49 2005CHROMAT_FILE: MSMg01no353_n09.g1 PHD_FILE: MSMg01no353_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,610,057 - 119,610,611)(119,790,437 - 119,790,956)
sequence
NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCCTTCCTGGTGTACCTAGTGAATTCCAGGACAGCCGA
GGCTACACAGTGAGACCCTGTCTCAAAAGAACAAAACACAAAACAAAACA
ACAACCAAAAAGTAAGTATTGCCAATTTAGGTTGTTTACAATCTGTGGGT
GACAAAACTCTCAAAATTTTCTCAAATTAGATGATGTTGGTAGCAACCTT
GTTATGTTTGAAAAAGCCTCTAAATTGTATGTACATTTTCTTTTTTAAAA
GATTTCTTATGAACAGTGTTCTACCTGTAGGCCAGAAGATGGCATCAGAT
CACATTACAGATGGTTGTGAGCCACCATATGGTTTGCTGGGAATTGAATT
AAGGACCTCTGGAAGCGCAGTCAGTGTGCATTCAACCTCAGAGCCATCTC
TCCAGCCTATATGTACACTTTCAAAAAGATAAATTCACCAGGTAAAGTGG
CACATGCCTTTAGGGAGGCAAAGACTAGTGGATCTTGGTGAATTTAAGGT
TAGTTTGGTCTACAAAAACCCTATCACAGAAAATAAACAATGAAACCCAC
AGGACCTCAATGGCTCAACCAATAAAGACACTTGCTGCCAAGACTGGCAA
CCTGAACTCAATTCCCACCCCACATGTTGAAAAGAGAGAACCAAATCTGT
TAGCGGTCCCCTGACCTCCACCGGCAAGCTGTTCCCTGAACTTCCAAAGA
ACA

NTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGGCAAGAGGGAATCACA
CCTTCTTAGAGAAGATGAGGGGACCCAGCACCACAAGTGAGGTAACACAT
TTTTAACATGATCAGAATTTCAAACACCAGGACCAGCACCCTACACCTCC
TTTCTCCATCAATATTCACACATAATTAAGTCAAGGATAATAGTTCCATA
ATACAAACAAACAGACGCCTACAGAGAAAGGAGGTGAAATTCATTTCCCC
TCACAGCCTGGCTTTTGTATGAGGATGAACAAGCTCATTTCCCTGATGAA
CTTGATGGAGCTCCAGAGTTGCCCAATTTAGGTACAACAGGTGCCAATGT
AGGCATCACCTTGCTCCCCCGGCCTTCCTGGTCAATTCCTGCTAAATTCA
TTTTGTGTCCAATTGACCCAACTTTGGCAGCTATAGGTGCCAAGGCAGGC
ATCACCTTGAGACTCTGACCATCGGCATCACTGGGGGGATTAGCTACTTT
TAAACCTAATGGGGCCAACTTTGGCATAGGCCTCCACAAAGTATCTGTGT
TGCTGTTCTCCGGGCCAGTCTTCATGTGTAAGATGGGAGGTGAAGAAACA
CTTTCAGGCTCTGCTGTGAGAACAAAAGTATCCTGCCCTCCATCACTATA
TTCCCTATGGCTAACAACAAAATCCCTTAACCTTAGGGTCTATAATCCCC
CTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_n09.b1 MSMg01no353_n09.b1 CHROMAT_FILE:
MSMg01no353_n09.b1 PHD_FILE: MSMg01no353_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:49 2005
         (559 letters)



>mm_chr2_119609853_119610811
          Length = 959

 Score = 1050 bits (543), Expect = 0.0
 Identities = 552/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggccttcctggtgtacctagtgaattccaggacagccgaggctacacagtga 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggccagcctggtgtacctagtgaattccaggacagccgaggctacacagtga 264

                                                                       
Query: 65  gaccctgtctcaaaagaacaaaacacaaaacaaaacaacaaccaaaaagtaagtattgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaccctgtctcaaaagaacaaaacacaaaacaaaacaacaaccaaaaagtaagtattgcc 324

                                                                       
Query: 125 aatttaggttgtttacaatctgtgggtgacaaaactctcaaaattttctcaaattagatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatttaggttgtttacaatctgtgggtgacaaaactctcaaaattttctcaaattagatg 384

                                                                       
Query: 185 atgttggtagcaaccttgttatgtttgaaaaagcctctaaattgtatgtacattttcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgttggtagcaaccttgttatgtttgaaaaagcctctaaattgtatgtacattttcttt 444

                                                                       
Query: 245 tttaaaagatttcttatgaacagtgttctacctgtaggccagaagatggcatcagatcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttaaaagatttcttatgaacagtgttctacctgtaggccagaagatggcatcagatcac 504

                                                                       
Query: 305 attacagatggttgtgagccaccatatggtttgctgggaattgaattaaggacctctgga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attacagatggttgtgagccaccatatggtttgctgggaattgaattaaggacctctgga 564

                                                                       
Query: 365 agcgcagtcagtgtgcattcaacctcagagccatctctccagcctatatgtacactttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcgcagtcagtgtgcattcaacctcagagccatctctccagcctatatgtacactttca 624

                                                                       
Query: 425 aaaagataaattcaccaggtaaagtggcacatgcctttagggaggcaaagactagtggat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaagataaattcaccaggtaaagtggcacatgcctttagggaggcaaagactagtggat 684

                                                                       
Query: 485 cttggtgaatttaaggttagtttggtctacaaaaaccctatcacagaaaataaacaatga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttggtgaatttaaggttagtttggtctacaaaaaccctatcacagaaaataaacaatga 744

                          
Query: 545 aacccacaggacctc 559
           |||| ||||||||||
Sbjct: 745 aaccaacaggacctc 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_n09.g1 MSMg01no353_n09.g1 CHROMAT_FILE:
MSMg01no353_n09.g1 PHD_FILE: MSMg01no353_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:49 2005
         (520 letters)



>mm_chr2_119790237_119791156
          Length = 920

 Score = 1006 bits (520), Expect = 0.0
 Identities = 520/520 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgggcaagagggaatcacaccttcttagagaagatgaggggacccagcaccacaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cttgggcaagagggaatcacaccttcttagagaagatgaggggacccagcaccacaagtg 661

                                                                       
Query: 61  aggtaacacatttttaacatgatcagaatttcaaacaccaggaccagcaccctacacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aggtaacacatttttaacatgatcagaatttcaaacaccaggaccagcaccctacacctc 601

                                                                       
Query: 121 ctttctccatcaatattcacacataattaagtcaaggataatagttccataatacaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctttctccatcaatattcacacataattaagtcaaggataatagttccataatacaaaca 541

                                                                       
Query: 181 aacagacgcctacagagaaaggaggtgaaattcatttcccctcacagcctggcttttgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aacagacgcctacagagaaaggaggtgaaattcatttcccctcacagcctggcttttgta 481

                                                                       
Query: 241 tgaggatgaacaagctcatttccctgatgaacttgatggagctccagagttgcccaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgaggatgaacaagctcatttccctgatgaacttgatggagctccagagttgcccaattt 421

                                                                       
Query: 301 aggtacaacaggtgccaatgtaggcatcaccttgctcccccggccttcctggtcaattcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aggtacaacaggtgccaatgtaggcatcaccttgctcccccggccttcctggtcaattcc 361

                                                                       
Query: 361 tgctaaattcattttgtgtccaattgacccaactttggcagctataggtgccaaggcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgctaaattcattttgtgtccaattgacccaactttggcagctataggtgccaaggcagg 301

                                                                       
Query: 421 catcaccttgagactctgaccatcggcatcactggggggattagctacttttaaacctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 catcaccttgagactctgaccatcggcatcactggggggattagctacttttaaacctaa 241

                                                   
Query: 481 tggggccaactttggcataggcctccacaaagtatctgtg 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tggggccaactttggcataggcctccacaaagtatctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |