BAC Information

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BAC

Clone NameMSMg01-354D14
Chromosome2 (Build37)
Map Location 157,930,727 - 158,120,190
singlet/doubletdoublet
Overlap geneTgm2, D630003M21Rik, Bpi
Upstream geneSamhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik
Downstream geneLbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354D14.T7 (MSMg01no354_d14.b1)MSMg01-354D14.TJ (MSMg01no354_d14.g1)
ACCAG464906AG464907
length735760
length of high quality
(start - end)
602 (52 - 653)369 (80 - 448)
definitionCHROMAT_FILE: MSMg01no354_d14.b1 PHD_FILE: MSMg01no354_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:19 2005CHROMAT_FILE: MSMg01no354_d14.g1 PHD_FILE: MSMg01no354_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,930,727 - 157,931,320)(158,119,813 - 158,120,190)
sequence
NNCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCCTTCTGTCTCTGANAGTTCATAACAGAGCAGCAGGG
CAAGGTGAGTCCTTAAATCATGTCAACTGTAATAGATGCCATCAACCCAA
GGGGTGCCCTTTAAATCACCACTCGGGGAGCACTGGACCAGAAGTTCAGA
GGGCAGACACGTGCTTCTGACTGCAGTCTATTGAGGAAGTCTTTGTAACG
GCCTTTGATCTGGGTCTTAGAAATCAACAACTTTTGATCACTCGGAGGAA
CAGAAGAAGGTAGGGTGGACTTAGGCAAGACAACAGCCTGGACAAAACTC
AAGTACCTTCTTAATTCAAGATTTTCTTTTTTAATCATGTGTGCGTTTGT
GTGCCTAGTTCGGGTCTGCAGGACTGCAGTGCCCATGGAGGCCAGAGGAC
CAGATGCCCCTGGAGCCGTTGATCTGTTTGGGGATATTTCACATAAAAGG
AGTCATATGATGTGTGGTCTCATGGGAGCAGCTGCTTCCAGGTAGGGAAA
TGCTTTCAAATCACATTTGTACTGTGCTCACATCACTTCCTCCTTTTCAT
TGCAGAGTAATACTCCGTTGTGTAGATGCCCCCTGTTTGCCCCCTATCAG
TGCAAGCTTGGGTTGTGTCCACTCTAGCTTTGGTGAATGCGTTTTCCATT
TTCTGGNTTCGCTCTGGGAGGAGCCCTTTAGGCCN
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGCTAGGGCTTTGAACAT
TGAGCTGAGCCCAGGCCTCACAACCTTTCTGGAGACTCTTGAAGAACATG
AAGTGCCCTGTCTACCGTGGGCATTGCCGAGAAGGTCAAATGGGCTGTCC
CGCTCACGCCACCAATGAGACATGGCAAAATGACAAGCCAGGGGCTGGTC
TTCTGTGGCCCACCTCACCCTCTCTCCCCTCAGGGTGTCTCTCCCCATCT
GTCATAAATAAGCAGACAGGGGGTCTAGAGAGATGGCTCATTGGTTAAGA
GCACTTCCCGCTCTTCCAGAGGTCATGAGTTCAATTCTCAGCAACCACAT
GGTGGCTCACAACCATCTGTAATGGGATCGAGTGCCCTTTTTCTGGTGTG
TCTGAAGACAGCAACGGTGTGCTCACATACATTTATCTAATAATTTGTTT
TTAAAGTCTATCCCAATTCTTTCTTTTTGGGTGTTTATCTATTTTTATAT
TGCTTTTTTTTCTTTTTTCATTTTTTTTTCCTCCCATTTTTTTTTCTTTC
TCTCTCTCCTTCTTTCTCTCTCCCCCTCCCCTCGTACCTCTCCTCCCACT
CATTTTTCTTACTACTCTCCTTTCTCTTTTTACTCACTCTCACATTCCTT
CTCTTATTTCCCCCTAATTCTTACCGCTTCTCCTCCTCGAATTCTATTTC
CTTTTTCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_d14.b1 MSMg01no354_d14.b1 CHROMAT_FILE:
MSMg01no354_d14.b1 PHD_FILE: MSMg01no354_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:19 2005
         (602 letters)



>mm_chr2_157930521_157931522
          Length = 1002

 Score = 1058 bits (547), Expect = 0.0
 Identities = 582/594 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcagccttctgtctctganagttcataacagagcagcagggcaaggtgagtccttaaa 66
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 207 attcagccttctgtctctgaaagttcataacagagcagcagggcaagatgagtccttaaa 266

                                                                       
Query: 67  tcatgtcaactgtaatagatgccatcaacccaaggggtgccctttaaatcaccactcggg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 267 tcatgtcaactgtaatagatgccatcaacccaaggggtgccctttaaatcaccactcagg 326

                                                                       
Query: 127 gagcactggaccagaagttcagagggcagacacgtgcttctgactgcagtctattgagga 186
           |||  |||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 327 gagggctgggccagaagttcagagggcagacgcgtccttctgactgcagcctattgagga 386

                                                                       
Query: 187 agtctttgtaacggcctttgatctgggtcttagaaatcaacaacttttgatcactcggag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agtctttgtaacggcctttgatctgggtcttagaaatcaacaacttttgatcactcggag 446

                                                                       
Query: 247 gaacagaagaaggtagggtggacttaggcaagacaacagcctggacaaaactcaagtacc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaacagaagaaggtagggtggacttaggcaagacaacagcctggacaaaactcaagtacc 506

                                                                       
Query: 307 ttcttaattcaagattttcttttttaatcatgtgtgcgtttgtgtgcctagttcgggtct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttcttaattcaagattttcttttttaatcatgtgtgcgtttgtgtgcctagttcgggtct 566

                                                                       
Query: 367 gcaggactgcagtgcccatggaggccagaggaccagatgcccctggagccgttgatctgt 426
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 567 gcaggactgcagtgcccatggaggccagaggaccagatgcccctggagccattgatctgt 626

                                                                       
Query: 427 ttggggatatttcacataaaaggagtcatatgatgtgtggtctcatgggagcagctgctt 486
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttggggatatttcacataaacggagtcatatgatgtgtggtctcatgggagcagctgctt 686

                                                                       
Query: 487 ccaggtagggaaatgctttcaaatcacatttgtactgtgctcacatcacttcctcctttt 546
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 687 ccaggtagggaaatgctttcaaatcacatctgtactgtgctcacatcacttcctcctttt 746

                                                                 
Query: 547 cattgcagagtaatactccgttgtgtagatgccccctgtttgccccctatcagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cattgcagagtaatactccgttgtgtagatgccccctgtttgccccctatcagt 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no354_d14.g1 MSMg01no354_d14.g1 CHROMAT_FILE:
MSMg01no354_d14.g1 PHD_FILE: MSMg01no354_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:19 2005
         (369 letters)



>mm_chr2_158119624_158120392
          Length = 769

 Score =  648 bits (335), Expect = 0.0
 Identities = 363/383 (94%), Gaps = 19/383 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggctagggctttgaacattgagctgagcccaggcctcacaacctttctggagactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 catggctagggctttgaacattgagctgagcccaggcctcacaacctttctggagactct 508

                                                                       
Query: 61  tgaagaacatgaagtgccctgtctaccgtgggcattgccgagaaggtcaaat-------- 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 507 tgaagaacatgaagtgccctgtctaccgtgggcattgccgagaaggtcaaatggaatgaa 448

                                                                       
Query: 113 ------gggctgtcccgctcacgccaccaatgagacatggcaaaatgacaagccaggggc 166
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gagtcagggctgtcccgctcacgccaccaatgagacatggcaaaatgacaagccaggggc 388

                                                                       
Query: 167 tggtcttctgtggcccacctcaccctctctcccctcagggtgtctctccccatctgtcat 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tggtcttctgtggcccacctcaccctctctcccctcagggtgtctctccccatctgtcat 328

                                                                       
Query: 227 aaataagcagacagggggtctagagagatggctcattggttaagagcacttcccgctctt 286
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaataagcagacaggggg-ctggagagatggctcattggttaagagcacttcccgctctt 269

                                                                       
Query: 287 ccagaggtcatgagttcaattctcagcaaccacatggtggctcacaaccatctgtaatgg 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccagaggtcatgagttcaattctcagcaaccacatggtggctcacaaccatctgtaatgg 209

                                  
Query: 347 gatcgagtgccctttttctggtg 369
               |||||||||||||||||||
Sbjct: 208 ----gagtgccctttttctggtg 190


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)