NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACACAATTTATCTTAGATACCGAGCTTTGATTTTTCTCCTATA
AAAGTGGAAAGTTTAAGAAAACACTATATATGAAGGTTTAATATTTTTAT
CAACATATATATATATGTGTGTGTGTGTATAATTTTGTTTTTTGGATACT
TGCCATTAGATTAAAATGTTATTTAGGTATCCTAGATACCTTTAAGAGGA
TATTTGAGCCTAAACCAAAATCATATGAAGAAATCAATTGTTTAAGTTTT
GGTAGAGAGATAGTTAAGATAATACATGTAGTGTACATAAAAATGTTTTG
GGGAGCCATGAAATTAGCTGTGTCTGTCTTTGCTAAATATATAGGATTAC
TGAATCTGGAAGACATGAAAGTGTTGAAAATACAACTCATCTTCTCAGAA
AAAAAAATATGTTAGTTGACATGCTTATTTGCTATTTATGAAGTATTGTT
CTAGGTATAAGACATTAAAAAAAATAGCCAAATAGTCCAGGCCATGTTCT
AAGAGTTTATATTGGTTGAAGACCTTATTTTGCTCAGTAAATTGTATCAT
ATTCCTGTACAAATTGCCATAATATGGTTCCACACCTATTTAGGCTATGT
GTTTACGTTTCTCCCACTGCGTTGAAACTTTCTAATCCTTCGTTTCTTGT
CCGGCACCTTTTATGTAGCCTAACCGCTCCCTACTATTTCCAC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAACAAAACAAAACAAA
AAACAAACATACAAAAAAAAACAACTAAAAGTGGCTAAGAAGTTTTTTGT
TTGTTTTTGTTTTTGTTTGTTTGTTTAAGTTTGCTATCCTTAGAAATCAG
GAAAATACAAATCAACATAACATTGAGATTTTATTTTATTCCCGCCAAAA
TCACTAATATCAATAAAACAGCTAACAACAACAACAACAACAACAAAAAG
ATTGCGAGAGAAGGCCATAAGGAAGAAGAGCCTCATTCACTGTGGAAGTT
AATACCATCTTACCAGCCATCTGGAAACAAGTGGAGAAAATCCTCAAGAA
AGGTAAAAACAGATCTACTACGTGCCCCAACAATATCCCTTTAGAGACTC
TGCATTCTACTCCATAGGTCTTTTTTCTGCTATATTCAGTGCTGCTCTAT
TCAATAATATATAGAAAAAATGAATGCAACCCAAGTGTCCTTCCAGTAAA
TATGAATAATGAAGATATATACCCTATGAAATACTATTAAAAAAAAAAGT
CCAAGTTCAGACTTGGGTGCACATGTCTTGGGTCCACCCTGGAAAAACTT
GAGACTTTGAAGAAGACAATCCCCATTACCAAACATTACCCCCCTTGCTC
TGGGCCCTATTGCCCTAAAAGTACCCATCTTTTACATCTGTCGGTGGGGG
GTGGCCTATTTCA

Query= MSMg01no355_a20.b1 MSMg01no355_a20.b1 CHROMAT_FILE:
MSMg01no355_a20.b1 PHD_FILE: MSMg01no355_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:24 2005
         (469 letters)



>mm_chr2_54753542_54754412
          Length = 871

 Score =  847 bits (438), Expect = 0.0
 Identities = 460/468 (98%), Gaps = 4/468 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattc-acacaatttatcttagataccgagctttgatttttctcctataaaagtggaaa 63
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacacaatttatcttagataccgacctttgatttttctcctataaaagtggaaa 264

                                                                       
Query: 64  gtttaagaaaacactatatatgaaggtttaatatttttatcaacatatatata--tatgt 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||
Sbjct: 265 gtttaagaaaacactatatatgaaggtttaatatttttatcaacatatatatatgtgtgt 324

                                                                       
Query: 122 gtgtgtgtgtataattttgttttttggatacttgccattagattaaaatgttatttaggt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtgtgtgtataattttgttttttggatacttgccattagattaaaatgttatttaggt 384

                                                                       
Query: 182 atcctagatacctttaagaggatatttgagcctaaaccaaaatcatatgaagaaatcaat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcctagatacctttaagaggatatttgagcctaaaccaaaatcatatgaagaaatcaat 444

                                                                       
Query: 242 tgtttaagttttggtagagagatagttaagataatacatgtagtgtacataaaaatgttt 301
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgcaagttttggtagagagatagttaagataatacatgtagtgtacataaaaatgttt 504

                                                                       
Query: 302 tggggagccatgaaattagctgtgtctgtctttgctaaatatataggattactgaatctg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggggagccatgaaattagctgtgtctgtctttgctaaatatataggattactgaatctg 564

                                                                       
Query: 362 gaagacatgaaagtgttgaaaatacaactcatcttctcagaaaaaaaaatatgttagttg 421
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 gaagacatgaaagtgttgaaaatacaactcatcttctcagaaaaaaaa-tatgttagttg 623

                                                           
Query: 422 acatgcttatttgctatttatgaagtattgttctaggtataagacatt 469
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acatgcttatttgctatttatgaagtattgttctaggtataagacatt 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 871
Length adjustment: 10
Effective length of query: 459
Effective length of database: 861
Effective search space:   395199
Effective search space used:   395199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)