BAC Information

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BAC

Clone NameMSMg01-355H02
Chromosome2 (Build37)
Map Location 61,675,440 - 61,675,877
singlet/doubletsinglet
Overlap genenone
Upstream geneRbms1, ENSMUSG00000075325, Tank, Psmd14, Tbr1
Downstream geneLOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355H02.T7 (MSMg01no355_h02.b1)MSMg01-355H02.TJ (MSMg01no355_h02.g1)
ACCAG465830AG465831
length763758
length of high quality
(start - end)
573 (44 - 616)438 (78 - 515)
definitionCHROMAT_FILE: MSMg01no355_h02.b1 PHD_FILE: MSMg01no355_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:54 2005CHROMAT_FILE: MSMg01no355_h02.g1 PHD_FILE: MSMg01no355_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATGAATATGAATATACAACATATCCAAACTTATAGAATACAATGAA
AGCAGTTCAAACAGGCAAGTTCACAGCACTAAGCATAAAATAAAAATAAA
CTGGAGAGATATTTTACTAGCAAACTTAGCATCAAACCTGAAAGCCTTGA
AAGAAAAGGAAGAAATTACACTCAAAAGGAGTACATCAAATGAAATTATC
AAACTTGGCTAAAATCAATAAAATAGAATAATATAAATTAAATAATAGAA
TAATAAAACCAATACAATGAATCAACAAAGCAAAGAGTTGGTTCTTTGAG
AAATCAATGAGATTGATAAAACATTAGGCAAATTAACTAAAAGGTGGAGA
GAGAAGATCCAAAATTAGAAATGAAGAGCATGACAACAGATAACTGATGA
AATCCAGAGAATCCTACAACAGACTTTTAAAACCTGCACTCTACCAAACT
GGAAAATCTAAAAGCAATGGACAAATTTCTTTATATATACCACCTACTGA
AGTTAAATCAAGATCAGATAAAGAATTTAAATAGAACTATAACCTCTAGA
GAAATGGAAGTAGTCAGAATGTCCCAGAAAAAGCCAAGGGCCAGACAGTT
TTAGTTTAGAATTCTAACAGACTTTCTTAGAAGTGTTAATGCCAAATACT
TCTCAAATTATTCCACACAAAAGAAACCGAAAGGACCTTGACAAATTCCT
TTTATGAGGCCCG
GGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTAGCAGCAATGAGACTTAA
ACTTGTAAATCCCTTATGCATTGGTGGGAGAATAGACCTTTTAGATTACT
TAGCCATCTTCCAGTTCTTTGGCACTTTCCCCTTCCCTTGTGAGTTCTCC
AACATTTTCATTAAAGCCTTTTCTATTTTCTATTCTGCTTCATTCAGTTT
GGGTTGTAATTCATGTTGGCCTGATGCCTTGGCAGCTATGAATGATTCTA
ATTGCCTCACTATCTATCTAGTCTGGCCTACTCAAAGCCTTTCAACTTTT
CATTCAAGCTTCTGCAGTATCTACTCCATGGGTCACAAACTTCCCACTCA
GATCTTTTTATTGCATCTTAGCTGCTTACCTCTTACATATTTAAGAAACT
TGAGAGCTTTCATCATTATTTTATTCTTTTTTTCTGTTAAACCACTTACT
CTTTTTGTAAAAACTATAACAGCACTGCAGATGCCCAAGGATAAAGGATG
ACTTTTGTCCAGATACTGTATCAGGAGAGCTGGATATTTTTGTTCCCGTT
GAGGTACCTATATATAGAATAACCCCCGAGAAGGTCTTTTCACAAATTAT
CTTATTTTGGTTCGATTTTGAATTTCTCCATTTTTAATAAACCCTTCCCT
TCCCCTCCCTTCCCTTCTCTCACTCTCTAACCCTATTCGCTCTCACTTTC
TACAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_h02.g1 MSMg01no355_h02.g1 CHROMAT_FILE:
MSMg01no355_h02.g1 PHD_FILE: MSMg01no355_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:54 2005
         (438 letters)



>mm_chr2_61675240_61676077
          Length = 838

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctattagcagcaatgagacttaaacttgtaaatcccttatgcattggtgggagaatagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattagcagcaatgagacttaaacttgtaaatcccttatgcattggtgggagaatagac 260

                                                                       
Query: 61  cttttagattacttagccatcttccagttctttggcactttccccttcccttgtgagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttagattacttagccatcttccagttctttggcactttccccttcccttgtgagttc 320

                                                                       
Query: 121 tccaacattttcattaaagccttttctattttctattctgcttcattcagtttgggttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaacattttcattaaagccttttctattttctattctgcttcattcagtttgggttgt 380

                                                                       
Query: 181 aattcatgttggcctgatgccttggcagctatgaatgattctaattgcctcactatctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattcatgttggcctgatgccttggcagctatgaatgattctaattgcctcactatctat 440

                                                                       
Query: 241 ctagtctggcctactcaaagcctttcaacttttcattcaagcttctgcagtatctactcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagtctggcctactcaaagcctttcaacttttcattcaagcttctgcagtatctactcc 500

                                                                       
Query: 301 atgggtcacaaacttcccactcagatctttttattgcatcttagctgcttacctcttaca 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataggtcacaaacttcccactcagatctttttattgcatcttagctgcttacctcttaca 560

                                                                       
Query: 361 tatttaagaaacttgagagctttcatcattattttattctttttttctgttaaaccactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttaagaaacttgagagctttcatcattattttattctttttttctgttaaaccactt 620

                             
Query: 421 actctttttgtaaaaact 438
           ||||||||||||||||||
Sbjct: 621 actctttttgtaaaaact 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)