BAC Information

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BAC

Clone NameMSMg01-355H15
Chromosome2 (Build37)
Map Location 87,482,562 - 87,483,084
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076
Downstream geneOlfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355H15.T7 (MSMg01no355_h15.b1)MSMg01-355H15.TJ (MSMg01no355_h15.g1)
ACCAG465856AG465857
length735750
length of high quality
(start - end)		631 (49 - 679)526 (81 - 606)
definitionCHROMAT_FILE: MSMg01no355_h15.b1 PHD_FILE: MSMg01no355_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:56 2005CHROMAT_FILE: MSMg01no355_h15.g1 PHD_FILE: MSMg01no355_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:56 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTTCTAGCATATAATTCATTTTGATCAAATTCATTCTGAAT
TTCATCTTCTCTAAGTTTTACTCTTTACCACAACCATATTCCCATTCCCA
CACTCAACCCTCTTTCTTCTCCCTGAGTCAAGTTAGTGCCTCCTGAATAT
GTGTGGGTATAGAGACATATGGCTGAGTAGAGCAAGCAATTTAGACACCA
CATCACTAAATAAAATGCACTTTTCCTCCATCCAGAAGCAATCAATTGCT
GATAACCTACCAGATATTTGGGGCTTCGTGGATCCCTCCCTGCTCCATAC
TAATAGTTACATTGGTTTGACATTTTGCAAGTGCATGCAGTATCAGCTGC
TATGAGTTTATATTTGCTACAGTCTTGTTATGTCCAGAAAATATTGGTTG
GTTTCAGATGTCAACTTCCTCTAGCTCTTTCAGACTTTCTTCTTCCTCTA
CCACAAAAGTCTCTTAACCTTGAGAAGAGTAGATGTTATATAGATAATTC
ATTTTGTGCTGAGTTCTATACATTTTCTTCTTTAATGCACTTTGCCAACA
ACAGGAGTTTGTATTAATTAGCATCTAATACAAAAGCAAATTACTGAAAT
GATAGTTGAGAAATACATCAATCTATCTGATATTTAAGATCTACAAACTT
TTTGGCAATCATTATGTAATGTGACATTGGGAAAC

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTAAACTTAATGTAAC
ACCTAAAATGTGTTTTAGTTGGCAAGCAAGATGGCTCAGTGCATAAGAAT
GCATAATGTTCTTTTAAGTTCAGTTTATATCATATACATCACTTCTCTTA
CTCCTTAATTTAGCTCATGTTCTAGGTGATCCAACACTATCATTTGGAAT
GAAGGGCACTACTGGTATCTCCCTCCAACATAATTAAAAGTAAAATAATT
CCTTTGAATTATTTGCTGACTTGGCAATTTGGGTCACAGTGACTTTTATT
GCAGTTAAAATACTTATTTATAGATAATTAATCCATAAACACTAACTTTA
TTACTATGCTATAAAATAAATATTTAAATGAATCCTGAGATTGAAGAGAA
ATAACTACTATATAGTGTATATTCAATTGGACATATTTCCTAAATTGCAT
AGATCCCTCTCAAACTATGTACAGTTACCATGGCTTTACATGACTGAATA
CGCCAGTATAGCCTCTATTTTTAGGATAGAGCTACTAAAGATAACAATAA
ATGAGATGCTGTGGGAGTAATTATCTACATTTTCTCATTGGGAATAAAGA
GCTAAGAATGAATCCAAAAGGGTAGTTTCTATATACAGTTCACGTGCAGT
TGTAACATGGGTGTTGGTAAAGCCAAAAATCATGCTATGCTCCGGTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_h15.g1 MSMg01no355_h15.g1 CHROMAT_FILE:
MSMg01no355_h15.g1 PHD_FILE: MSMg01no355_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:56 2005
         (526 letters)



>mm_chr2_87482362_87483284
          Length = 923

 Score =  909 bits (470), Expect = 0.0
 Identities = 512/526 (97%), Gaps = 3/526 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctaaacttaatgtaacacctaaaatgtgttttagttggcaagcaagatggctcagt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctaaacttaatataacacctaaaatgtgttttagttggcaagcaagatggctcagt 260

                                                                       
Query: 61  gcataagaatgcataatgttcttttaagttcagtttatatcatatacatcacttctctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcataagaatgcataatgttcttttaagttcagtttatatcatatacatcacttctctta 320

                                                                       
Query: 121 ctccttaatttagctcatgttctaggtgatccaacactatcatttggaatgaagggcact 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccttaatttagctcaggttctaggtgatccaacactatcatttggaatgaagggcact 380

                                                                       
Query: 181 actggtatctccctccaacataattaaaagtaaaataattcctttgaattatttgctgac 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgatatctccctccaacataattaaaagtaaaataattcctttgaattatttgctgac 440

                                                                       
Query: 241 ttggcaatttgggtcacagtgacttttattgcagttaaaatacttatttatagataatta 300
           ||||||||||| ||  |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggcaatttgtgttgcagtgatttttattgcagttaaaatacttatttatagataatta 500

                                                                       
Query: 301 atccataaacactaactttattactatgctataaaataaatatttaaatgaatcctgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccataaacactaactttattactatgctataaaataaatatttaaatgaatcctgaga 560

                                                                       
Query: 361 ttgaagagaaataactactatatagtgtatattcaattggacatatttcctaaattgcat 420
           |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaagagaaataactac-ata-a-tgtatattcaattggacatatttcctaaattgcat 617

                                                                       
Query: 421 agatccctctcaaactatgtacagttaccatggctttacatgactgaatacgccagtata 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 618 agatccctctcaaactatgtacagttaccatggctttacatgactaaatactccagtata 677

                                                         
Query: 481 gcctctatttttaggatagagctactaaagataacaataaatgaga 526
           ||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 678 gcctctatttttaggatagagctacaaaaaataacaataaatgaga 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 923
Length adjustment: 10
Effective length of query: 516
Effective length of database: 913
Effective search space:   471108
Effective search space used:   471108
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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