BAC Information

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BAC

Clone NameMSMg01-355L03
Chromosome2 (Build37)
Map Location 86,964,034 - 86,964,532
singlet/doubletsinglet
Overlap geneLOC668402
Upstream geneOlfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259
Downstream geneOlfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355L03.T7 (MSMg01no355_l03.b1)MSMg01-355L03.TJ (MSMg01no355_l03.g1)
ACCAG466021AG466022
length763771
length of high quality
(start - end)		605 (43 - 647)499 (74 - 572)
definitionCHROMAT_FILE: MSMg01no355_l03.b1 PHD_FILE: MSMg01no355_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:13 2005CHROMAT_FILE: MSMg01no355_l03.g1 PHD_FILE: MSMg01no355_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCTGGTTGAATTAGGGGAAGGACTGAAGAAGCTGAAGGGAAGAGTGA
CCCCATAGGAAGCCTAGAAATCTCAACTATCCCAGACCCCAGGGAGCTCC
CAAAGATTTAGCTACCAACCAAGAGCATACAAGGACTAGATTGAGGCACC
TGACAGAAATATAGCAGAGTTTGCCTGGTCAGGCCTCAGTGGAAGAAGGT
GTGCTTAATCCTGGAGAGACTTGAAGCCCCAGGGAAAGGGAAAGCCTCAT
GTCTGGGGATCACCCTCTTCAAGGAAAAAGGGAAGAGTGGATGAGGTACT
GTGGGAGGGGGAACCGAGAAGCAGGGGCAATGACTGGAATGGAAATAAAC
GAAATAATAAAAAAGAAAAGAAAGAAAATGTCTAAGGAATGGGAACTGGA
GAGTTGGCTCTGCAATTAAGAGCACTAAATGCATTTTTAGGGATACTGTG
TTCAGTTCTCACTTAGCCTCTCATAACCATGAATAATGGGATCTGATGTC
TTCTTCTGACCTTCAGGCATTCATACAGCCCTTATATCCATTATAAGTAA
ATGAAAGAATGAATAAATAAGTAAATAAATGTCTAAGGATCATTTCAGTG
GTTGGCTCAGTAAGGAAAATGTTTTTCTTGCCAGTATGATAAATTGAGCT
CTCATGTCCCTGAACCTATATTTAATAAAGACAGTTGCCACGGAATACGG
AATGCATTTTTAN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCTACAATGGGAAATGTTTTTGAAAA
GTTGTTTGAAAGCCTATTTGGGAAAAAGGAAATGAGGATTCTCATGGTGG
ACTTAGATGCAGCTAGAACAATGATGACCTTGTACAAACTGAAGCTGGGA
GAGATTGTGACAACCATCCCTACAATAGGTTTCCATGTGGACACCTTAGA
ACATAAAAACATAAGCTTCACTGTCTGGGTTGTTGGTGACCAGGACAAAA
ATCAGACCTTTGTGGCAACATTACTTCCTGAATACTCAAGGTCTGATATT
TGTGGTTTACTGAAATGACAGAGAGCGGGTCAACAAGGCCCGGGAAGAAT
TGACCAGAATGCTAGTAGATGATGAGCTCAGAGATGCAGTCTTATTGGTG
TTTGTAAACAAACAGGATCTTCCTAATCCTATGAACACAGCAGAGATCAC
AGACAAGCTTGGCTTACATTTCCTTCATCAGAGAAACTGGTACATTCAGG
CTACCTGTGAGACCAGTGCAGATGAGCTTTACAAAGGCGTGGACTGGTTC
TCCAACCAGCTCAAAAACTGTGAGTGATCAGAAGCAACCATTCCCCCATG
CACTGTGGCAAAAACAGCTGGCCTTACCCGTGCATGTGAGCATGTGAAGA
GCCCCTGGGCTTGTTGGCCTGGTAAAGAGGCTTCTTTTCTCCCCTGTGGC
TTTAACTTGTTATTTGAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_l03.g1 MSMg01no355_l03.g1 CHROMAT_FILE:
MSMg01no355_l03.g1 PHD_FILE: MSMg01no355_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:13 2005
         (499 letters)



>mm_chr2_86963834_86964732
          Length = 899

 Score =  942 bits (487), Expect = 0.0
 Identities = 496/499 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctacaatgggaaatgtttttgaaaagttgtttgaaagcctatttgggaaaaaggaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agctacaatgggaaatgtttttgaaaagttgtttgaaagcctatttgggaaaaaggaaat 640

                                                                       
Query: 61  gaggattctcatggtggacttagatgcagctagaacaatgatgaccttgtacaaactgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaggattctcatggtggacttagatgcagctagaacaatgatgaccttgtacaaactgaa 580

                                                                       
Query: 121 gctgggagagattgtgacaaccatccctacaataggtttccatgtggacaccttagaaca 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 579 gctgggagagattgtgacaaccatccctacaataggtttccacgtggacaccttagaaca 520

                                                                       
Query: 181 taaaaacataagcttcactgtctgggttgttggtgaccaggacaaaaatcagacctttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taaaaacataagcttcactgtctgggttgttggtgaccaggacaaaaatcagacctttgt 460

                                                                       
Query: 241 ggcaacattacttcctgaatactcaaggtctgatatttgtggtttactgaaatgacagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggcaacattacttcctgaatactcaaggtctgatatttgtggtttactgaaatgacagag 400

                                                                       
Query: 301 agcgggtcaacaaggcccgggaagaattgaccagaatgctagtagatgatgagctcagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agcgggtcaacaaggcccgggaagaattgaccagaatgctagtagatgatgagctcagag 340

                                                                       
Query: 361 atgcagtcttattggtgtttgtaaacaaacaggatcttcctaatcctatgaacacagcag 420
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 339 atgcagtcttattggtgcttgtaaacaaacaggatcttcctaatgctatgaacacagcag 280

                                                                       
Query: 421 agatcacagacaagcttggcttacatttccttcatcagagaaactggtacattcaggcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agatcacagacaagcttggcttacatttccttcatcagagaaactggtacattcaggcta 220

                              
Query: 481 cctgtgagaccagtgcaga 499
           |||||||||||||||||||
Sbjct: 219 cctgtgagaccagtgcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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