Query= MSMg01no358_b19.b1 MSMg01no358_b19.b1 CHROMAT_FILE:
MSMg01no358_b19.b1 PHD_FILE: MSMg01no358_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:18 2005
(486 letters)
>mm_chr2_29703170_29704054
Length = 885
Score = 864 bits (447), Expect = 0.0
Identities = 465/477 (97%), Gaps = 11/477 (2%)
Strand = Plus / Plus
Query: 10 ttctggcaacaaccttcagagtaggtatgttctcaattccattttacagataaagaaaca 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttctggcaacaaccttcagagtaggtatgttctcaattccattttacagataaagaaaca 269
Query: 70 gcccagtggctaggaagtgacagaggcaaggttggaacctaagattgtccaacctattgc 129
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 270 gcccagtggctaggaagtgacagaggcaaggttggaaccta-gattgtccaacctattgc 328
Query: 130 aaactattttcctagtctttcattagcagctacagagaagccagccttaactgtgctcca 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaactattttcctagtctttcattagcagctacagagaagccagccttaactgtgctcca 388
Query: 190 ggcagtggcttctaggagactgtataaatcataacccactacagtctggtgtgaacacag 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggcagtggcttctaggagactgtataaatcataacccactacagtctggtgtgaacacag 448
Query: 250 cctgagtggacaggtcatggcactgcaggaacggagagcagaaaaaggctttcccctcct 309
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cctgagtggacagggcatggcactgcaggaacggagagcagaaaaaggctttcccctcct 508
Query: 310 gccgtcttccccccacatcactactgcaggtttggttttgtctgtgctactaggaatcta 369
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 509 gccgtcttccccccacatcactactgcaggt----------ctgtgctactaggaatcta 558
Query: 370 accaagagccccaagcaaatgctcacctccaggctgatgtctgagctaaagctgccctca 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 accaagagccccaagcaaatgctcacctccaggctgatgtctgagctaaagctgccctca 618
Query: 430 cccttacccattaccctcagggcacgagaggccagtgaaaatcctgcacacttacag 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cccttacccattaccctcagggcacgagaggccagtgaaaatcctgcacacttacag 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_b19.g1 MSMg01no358_b19.g1 CHROMAT_FILE:
MSMg01no358_b19.g1 PHD_FILE: MSMg01no358_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:18 2005
(466 letters)
>mm_chr2_29885205_29886070
Length = 866
Score = 901 bits (466), Expect = 0.0
Identities = 466/466 (100%)
Strand = Plus / Minus
Query: 1 cttgagggcctcctcagtcactcctgttgtgttcctaaaagaacaaaagtagggagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cttgagggcctcctcagtcactcctgttgtgttcctaaaagaacaaaagtagggagcagg 607
Query: 61 ctctccatgctgaagtggcttgtttcccatcctgtacccgtcccttgttaacaagggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctctccatgctgaagtggcttgtttcccatcctgtacccgtcccttgttaacaagggctc 547
Query: 121 taggctggctcctgctgggcccccacaccggtacctggcctggatctgctgctccaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 taggctggctcctgctgggcccccacaccggtacctggcctggatctgctgctccaggtt 487
Query: 181 gtgctgcatgcgcatgcccagctggtctaactggtcccactgctgggccaggcccacagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtgctgcatgcgcatgcccagctggtctaactggtcccactgctgggccaggcccacagt 427
Query: 241 gctgtgctccgtgtacttgttgtccaggatgagggcttcctccatggcagcccccaggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gctgtgctccgtgtacttgttgtccaggatgagggcttcctccatggcagcccccaggtc 367
Query: 301 ctcgatcttcttcagctgacttctcatggctcgaatctcctggtgcttgcgcttattggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctcgatcttcttcagctgacttctcatggctcgaatctcctggtgcttgcgcttattggg 307
Query: 361 tgggacaaatgcagtgtgaggctgggaccccatagctcagggggctatgctgccacggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgggacaaatgcagtgtgaggctgggaccccatagctcagggggctatgctgccacggga 247
Query: 421 cccagctgggatcgcacaggcttgaaagagtcaaggaaaggaagca 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cccagctgggatcgcacaggcttgaaagagtcaaggaaaggaagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
