Query= MSMg01no359_d19.b1 MSMg01no359_d19.b1 CHROMAT_FILE:
MSMg01no359_d19.b1 PHD_FILE: MSMg01no359_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:41 2005
(493 letters)
>mm_chr2_180673746_180674639
Length = 894
Score = 847 bits (438), Expect = 0.0
Identities = 477/490 (97%), Gaps = 1/490 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatttcttccatggaagttgctgattgtcctgtgaacttgacctctaccaagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatttcttccatggaagttgctgattgtcctgtgaacttgacctctaccaagca 264
Query: 65 ttggcactgggaaggttggaggcctcaagatgtgaccaggtttctccatggactaacctg 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 ttggcactgggaaggttggaggcctcaagatgtgaccaggcttctccatggactaacctg 324
Query: 125 gttgtgtccaaagtgtggcacccacagttatagggctgtgctgctgtggctgctgttcca 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 gttgtgtccaaggtgtggcacccacagttatagggctgtgctgctgtggctgctgtttca 384
Query: 185 cagtttcctaaacctctccttcccactcttttgagtccattgatcaaaatgacctcggct 244
||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 385 cagtttcctaaacctttccttcccactcctttgagtccattgatcaaaataacctcggct 444
Query: 245 ttaagaagtgataattgaggcagaaagctcaaatggttctctaggaccaaaaggtggcac 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 ttaagaagtgataattgaggcagaaagctcaaatggttctctaggaccaaaatgtggcac 504
Query: 305 catatgggtccaggagctgtttctctcccc-actgttcttcactaacttgagcagagcta 363
||| |||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 505 catctgggaccaggagctgtttctctcccccactgttcttcactaacttgagcagtgcta 564
Query: 364 gagaggtctatggagtcaattccatgttcacccgctatagcggttctttagtttcatgta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagaggtctatggagtcaattccatgttcacccgctatagcggttctttagtttcatgta 624
Query: 424 acaccagtgaatccacggttaggtgggacatgtttgggaggtggtatcctcaccagggtc 483
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaccagtgaacccacagttaggtgggacatgtttgggaggtggtatcctcaccagggtc 684
Query: 484 atgatgaggt 493
||||||||||
Sbjct: 685 atgatgaggt 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space: 426972
Effective search space used: 426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_d19.g1 MSMg01no359_d19.g1 CHROMAT_FILE:
MSMg01no359_d19.g1 PHD_FILE: MSMg01no359_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:41 2005
(354 letters)
>mm_chr2_180796045_180796798
Length = 754
Score = 669 bits (346), Expect = 0.0
Identities = 352/354 (99%)
Strand = Plus / Minus
Query: 1 cttctgtcatgatatgctgcacatttctctacactttctcacacaggtttagctctctgg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cttctgtcatgatgtgctgcacatttctctacactttctcacacaggtttagctctctgg 495
Query: 61 ggagctgggggttggtgtgacagatgccaggctcttcagtgttcttatctttgccaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggagctgggggttggtgtgacagatgccaggctcttcagtgttcttatctttgccaatag 435
Query: 121 ttaatcctgtatggtattggtgaaaaacacctgggtttctctacccttcctgagggcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttaatcctgtatggtattggtgaaaaacacctgggtttctctacccttcctgagggcaag 375
Query: 181 tccctcaggtagaagttgacccgtttctccagagtcaggtatctacctttctatacttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tccctcaggtagaagttgacccgtttctccagagtcaggtatctacctttctatacttgc 315
Query: 241 cagagtctcttagagctttggaagctcgtataccctgaggcccaggcaaccctggctgcc 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagagtctcttagagctttgaaagctcgtataccctgaggcccaggcaaccctggctgcc 255
Query: 301 ctagggagctggctttcacagctgtgcactgcagggatggtgggccctgaccag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctagggagctggctttcacagctgtgcactgcagggatggtgggccctgaccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space: 257025
Effective search space used: 257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
