BAC Information

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BAC

Clone NameMSMg01-360A09
Chromosome2 (Build37)
Map Location 145,884,311 - 145,884,489
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneInsm1, A230067G21Rik, LOC668918, Gm114, Xrn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360A09.T7 (MSMg01no360_a09.b1)MSMg01-360A09.TJ (MSMg01no360_a09.g1)
ACCAG469299AG469300
length879828
length of high quality
(start - end)
---180 (76 - 255)
definitionCHROMAT_FILE: MSMg01no360_a09.b1 PHD_FILE: MSMg01no360_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:39 2005CHROMAT_FILE: MSMg01no360_a09.g1 PHD_FILE: MSMg01no360_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAACTTATAAAAATTAGATTNTTTNNCTCTCCTATCTTCCTGTCGTC
GTGTTCGGGCGAGGGAGAAGGAACTACGGGGCCTTACCGCCGGCCCGGTT
CGGGGCGGGTCTTGTATGTTGTGTTTGCGTCTTGATAGAATGGACAACAC
AAATAATTGTTCAACATTATATTTTTATGCTTGTGTTGGTGTGGGCATTG
GTATTCGCATTCTTTCTCCGGAGATGACTGTTTTTTGTTGAGGAGCCGGG
ACTATCATTATATACGGGGTTTGCACACCGCTGCCCTGCTTCCCTACATT
TTCTACTAACAAATAAGGTGGACACAGGCACTTAGAACAACGGTTGGGGA
ACATTATACACGAACCGATCACTTTATTTTTGTTTGTGTGTGGTCTTGCG
ATGGGCGGTGTGGTGGACCACTAGAGCGGCGGTGAGTGGAGATGGGTTGT
GGGGACATAAGGGGATGTGATGGCGAGGCGGGTGAGGGGTGGGGGGGGTT
GGGTGTGGGCTCGGCTTGGGTAGGAGCCCTGGGCGAAGTCCTTCCAGTAG
GTGCGGCAGCGCACTGGCACGTGGGTTGGGAGGCGGAGTGTATGTGGGTT
AGCTGTTGGTCGGGCGCAGATAGGACTCAGATAACGCGTACATAAAATTT
TATGATACACGGTGCGTGTATTTCCTTAATGGAACAGAAGAAAAGGAGGG
TTGTTACTTTAATATCTTTTTCTTTTCCTCCCCGGCATTACAACTAAACG
AACTAACGGTGGAGAATGGTATACGGGCCGGTCTCCCGATGGCTGCGCTG
TCGCCCCCCTGTACAGATTGAGTCTGTCGCTTGTCCTAAGCGAGACCATG
GTTTGTGGGCAAAGCCCCCCCACCCTTTT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGGTAGCCAATTGCCATGGAGAT
AAGATATTTATGCTTTTCCAAGTATCGGGACACCTGAAAGTTTAAATTCT
TATTTAAGCCCACTGGCTTGATCCACCCCTGCCTACTATTTAAAAGTAAG
TTGTACTTTCAAAGGGTGGTTTTTGTTTGTGTGTGTGTGTGTGTGTGTGT
GTGTTTCACATANCCATCCTCCCCCCTTTTTCTCTCCTCTTTCCCTTTTC
TCATTCTCCCCCCCACTTCTCTTTTTTTTTTTTATCCATTTCATTTATTT
TATGTGATCCCTTTTTTTTTATCTCTTTTCATTTTTGTCAACCTATTTTC
CCCCCATTTTTTTCTTTTCTTTACTCCTCTATAATTTATTTTTTCTCCTT
TATTTCTAACTTTCACCCCTTTTTTCTCCTCTCTCCCTCTTCTTCTTTTT
CCCCTTTTTTCTTTCCTTCTTTTTCCCCTACCCTTTTCTTTCCCGCTGCT
TTCTTTCCCCTTTTTCCCTTTACCTCCCGTTACATTCCTTTTTTCGTTTC
CAACCCCTTTTTCCTCCATTTCTTTTTCCTTCAAACCCTCCCCTTTTCAT
ACTACACTTTTATTTTTTTTATTCCTTCTTACATTATTCCTCCCTTATCC
CCCTTTTCTTATTTCTTTTCTTCTCTTTTTCTTTCGCCCTTTTTTCCTTC
TCTTTTTCCTCCTTTTCCTCTCCCTATCTTTTCGTTTTACGTCTTATTAC
TTTCCATATTTCTCTCTTTTTCTCTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_a09.g1 MSMg01no360_a09.g1 CHROMAT_FILE:
MSMg01no360_a09.g1 PHD_FILE: MSMg01no360_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:39 2005
         (180 letters)



>mm_chr2_145884142_145884721
          Length = 580

 Score =  346 bits (179), Expect = e-100
 Identities = 179/179 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggtagccaattgccatggagataagatatttatgcttttccaagtatcgggacacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctgggtagccaattgccatggagataagatatttatgcttttccaagtatcgggacacct 289

                                                                       
Query: 61  gaaagtttaaattcttatttaagcccactggcttgatccacccctgcctactatttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gaaagtttaaattcttatttaagcccactggcttgatccacccctgcctactatttaaaa 229

                                                                      
Query: 121 gtaagttgtactttcaaagggtggtttttgtttgtgtgtgtgtgtgtgtgtgtgtgtgt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gtaagttgtactttcaaagggtggtttttgtttgtgtgtgtgtgtgtgtgtgtgtgtgt 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)