BAC Information

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BAC

Clone NameMSMg01-360A13
Chromosome2 (Build37)
Map Location 180,190,958 - 180,191,312
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283
Downstream geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360A13.T7 (MSMg01no360_a13.b1)MSMg01-360A13.TJ (MSMg01no360_a13.g1)
ACCAG469307AG469308
length735751
length of high quality
(start - end)
---360 (73 - 432)
definitionCHROMAT_FILE: MSMg01no360_a13.b1 PHD_FILE: MSMg01no360_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:40 2005CHROMAT_FILE: MSMg01no360_a13.g1 PHD_FILE: MSMg01no360_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTTTTTCTCAATCTTCCAAATCCCAAAAAACATGAATAATTTAGCAC
GGCGGGCGCGGCTGGTGTTAAGAGTTACTAAATTCACATCAACATCCATA
TTTTATATTAGATGGTTCATGTTACGATGACCCTCTGGATGTGGACAGTT
TGTAATACCGAGGTGCAAGAAAAAGGACTGGCGGAGGAACCCGGGGCGGG
GGTTTTGTCCCCGCCCCCCCCCAAGGCCGGGTTTGCCCCAAGCGGTCTTC
CACATAGGCCTTAGCATGTTGTACGGGTCTGTGCTTGGGGGGGTTTGAAT
GCGTGGGCGCTGTTTTTGGTGGTTTGGTTCTCTGAGGATCATAACCTACA
CATCTTTCTTGTGTGTATTTGGGGTAATAGCGATTTAGTACACTATCGCG
TTAGTGCTTCACCGAAGGCTCACATATCATTACGCAACGACGCTATCATT
TATAGGGCGTCGGAAGAGGTCCGTCTTGGGAAGTCGCTTTTACTACTTCA
GTTATGGTCCTCCACGTGTTCCCGCTTCAGCGAACGCGATTCTTTTATTC
TGTCCCAGTCGGGGTTGCGGCCACTGACCAGGAGTCGCTGTTGTGCTGCA
CCGTTTTCCTTTTCCGCGGCTTTCCTCAAACGGGTCAGGCGGTTGGTTTG
CGGGGCATTTCGTATGTGGGCTTCGCCCCCGATGCGTTGTCTGCGCGCTT
CCTGTCGCACGGTGTTACGCACTCGCACCACCTGA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCATCCGGCTCCCTTGAGCCCACTCTG
TCCCCGCATTGGTTCCCCGGGATGTGTCTTCAGACAACGCACCCGGGGCT
CCGCCGCGCTTTAGTCCAGCCTCCGCAAACACCTGCCGCGCTCCTGACGT
CAGCAGGTCGGAGTCTGGCATACCTAGGAGGCATCTAGTACGGAGCCAGA
CCCTGTCCCCATCCCGGTCCGAGATCTCAGAGCAGTCCAGATCCCAGAGC
ACTCACCTTCCCACGAACCTTGGCTGCCGCGCTGCGCCCTGCGCTCTGGA
CTACGCGCGCAGCCCACTCCCGCTTCATTCATCGCCCAAGCCGCTCCCGC
AGGGATAGGGGTAGTGGCCTCACCACCGTCACCAATGTCAGCGAGGCTCG
GGCGGGCCGGGCCAGAGGTGACAGTATCTGAGGTCGTGCCGGGGCGGGGC
CGAGCGGATGGGCGGAACTTGCGCGGTCCACGTACAGCACAGAGAGCGGC
ACTTATCTGGCGCTTTGCTTGCGGCGATCTCTTTCTGCTGGGCCATTTTC
TGTACGTTCGTCTCCATTAAAATCCGTTTCCATGTCTCTCTGCGCCGTAA
AATGTTTTTTGCCTTAAGTGTGTCACCTAAACGCCTATTCATGGCCTTTC
GTTTACGATACCCCCCTTTACCTTCCGCTAATCCCTTCCTTTCCCTATAT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_a13.g1 MSMg01no360_a13.g1 CHROMAT_FILE:
MSMg01no360_a13.g1 PHD_FILE: MSMg01no360_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:40 2005
         (360 letters)



>mm_chr2_180190758_180191516
          Length = 759

 Score =  642 bits (332), Expect = 0.0
 Identities = 350/356 (98%), Gaps = 1/356 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcatccggctcccttgagcccactctgtccccgcattggttccccgggatgtgtcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgcatccggctcccttgagcccactctgtccccgcattggttccccgggatgtgtcttca 496

                                                                       
Query: 61  gacaacgcacccggggctccgccgcgctttagtccagcctccgcaaacacctgccgcgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gacaacgcacccggggctccgccgcgctttagtccagcctccgcaaacacctgccgcgct 436

                                                                       
Query: 121 cctgacgtcagcaggtcggagtctggcatacctaggaggcatctagtacggagccagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cctgacgtcagcaggtcggagtctggcatacctaggaggcatctagtacggagccagacc 376

                                                                       
Query: 181 ctgtccccatcccggtccgagatctcagagcagtccagatcccagagcactcaccttccc 240
           |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 375 ctgtccccatcctggtccgagacctcaaagcagtccagatcccagagcactcaccttccc 316

                                                                       
Query: 241 acgaaccttggctgccgcgctgcgccctgcgctctggactacgcgcgcagcccactcccg 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acgaacc-cggctgccgcgctgcgccctgcgctctggactacgcgcgcagcccactcccg 257

                                                                   
Query: 301 cttcattcatcgcccaagccgctcccgcagggataggggtagtggcctcaccaccg 356
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 256 cttcattcatcgcccaagccgctcccgcagggatgggggtagtggcctcaccaccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 759
Length adjustment: 9
Effective length of query: 351
Effective length of database: 750
Effective search space:   263250
Effective search space used:   263250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)