Query= MSMg01no360_d20.b1 MSMg01no360_d20.b1 CHROMAT_FILE:
MSMg01no360_d20.b1 PHD_FILE: MSMg01no360_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:56 2005
(558 letters)
>mm_chr2_130131652_130132608
Length = 957
Score = 1048 bits (542), Expect = 0.0
Identities = 551/554 (99%), Gaps = 1/554 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttatagtttacacacttgacttgagatatgaaccttcctaaatatgggagaa 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttatagtttatacacttgacttgagatatgaaccttcctaaatatgggagaa 264
Query: 65 gcctgcagttggggagagcctgtcagaatgccttcatgcagcacctgtgtattccttctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcctgcagttggggagagcctgtcagaatgccttcatgcagcacctgtgtattccttctt 324
Query: 125 ctcaaagaagcaagctaggttagcctcagtgttgtaggcctctttatggaactgatatgg 184
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 325 ctcaaagaagcaagctaggttagcctcagtgttgttg-cctctttatggaactgatatgg 383
Query: 185 tccttgcccaaacgcttggcatgtcaaagtctagtcctggtcagagccactggggtcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccttgcccaaacgcttggcatgtcaaagtctagtcctggtcagagccactggggtcttt 443
Query: 245 ctccctggaggccccttccagtggttttccagttcctttcctcccacagtggcgtgggcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctccctggaggccccttccagtggttttccagttcctttcctcccacagtggcgtgggcc 503
Query: 305 tggcaagagcacattttgaaaagcagcccccctccaacctcaggaagtccaacttcttcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggcaagagcacattttgaaaagcagcccccctccaacctcaggaagtccaacttcttcc 563
Query: 365 acttcgtgctggccatgtacgaccggcaggggcagcccgtggaggtggagcgcacagcct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acttcgtgctggccatgtacgaccggcaggggcagcccgtggaggtggagcgcacagcct 623
Query: 425 tcatcgacttcgtggaaaaggatcgagtgagaggctcatgggctggcctgggactagcac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcatcgacttcgtggaaaaggatcgagtgagaggctcatgggctggcctgggactagcac 683
Query: 485 tgggagtgatgggagggcttcagggaccctgccacgttcactcgaacactggggaagatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgggagtgatgggagggcttcagggaccctgccacgttcactcgaacactggggaagatg 743
Query: 545 agtggataaatggt 558
||||||||||||||
Sbjct: 744 agtggataaatggt 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space: 518956
Effective search space used: 518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_d20.g1 MSMg01no360_d20.g1 CHROMAT_FILE:
MSMg01no360_d20.g1 PHD_FILE: MSMg01no360_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:56 2005
(446 letters)
>mm_chr2_130344590_130345435
Length = 846
Score = 847 bits (438), Expect = 0.0
Identities = 444/446 (99%)
Strand = Plus / Minus
Query: 1 ttctctgaagagcttattgtcatcagccattctccggttaatctcctcttccagcttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttctctgaagagcttattgtcatcagccattctccggttaatctcctcttccagcttgtc 587
Query: 61 cacaggcagtggtgggtacttcctgttggtgctcggggacctggccagaagtggtacact 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 586 cacaggcagtggtgggtacttcctgttggtgcttggggacctggccagaagtggtacact 527
Query: 121 ttggggctctgtggtatacaaaagggaaggtcagttaggtgccctggagatgggtgcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttggggctctgtggtatacaaaagggaaggtcagttaggtgccctggagatgggtgcagc 467
Query: 181 cccttctgtgaccactcatggtctcattcttttgaaaagatggggaaaagaagcagagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cccttctgtgaccactcatggtctcattcttttgaaaagatggggaaaagaagcagagat 407
Query: 241 atggctgtcagtaaaaggtttttgacaccaagtgtggcagcctcaactggattcctagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atggctgtcagtaaaaggtttttgacaccaagtgtggcagcctcaactggattcctagaa 347
Query: 301 cccacaagatgggagtagagaaccagctcttgcatgttagcaagctctgaccgccacaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cccacaagatgggagtagagaaccagctcttgcatgttagcaagctctgaccgccacaat 287
Query: 361 cgtgccatggcacacgcgtgagcacacaaatgagataaataatggaaagatatacgtaag 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cgtgccacggcacacgcgtgagcacacaaatgagataaataatggaaagatatacgtaag 227
Query: 421 aggatgggggatgttcacatccggat 446
||||||||||||||||||||||||||
Sbjct: 226 aggatgggggatgttcacatccggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
