BAC Information

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BAC

Clone NameMSMg01-360G20
Chromosome2 (Build37)
Map Location 49,112,573 - 49,113,022
singlet/doubletsinglet
Overlap geneMbd5
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508
Downstream geneLOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik, Lypd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G20.T7 (MSMg01no360_g20.b1)MSMg01-360G20.TJ (MSMg01no360_g20.g1)
ACCAG469605AG469606
length766925
length of high quality
(start - end)		456 (44 - 499)---
definitionCHROMAT_FILE: MSMg01no360_g20.b1 PHD_FILE: MSMg01no360_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:10 2005CHROMAT_FILE: MSMg01no360_g20.g1 PHD_FILE: MSMg01no360_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCAGCATTCTGCTTCAACCTCCCTGTCCCCTTCTCCAGTGACATCCC
CAGTGCACATGATGGGGACTGGAATTGGAAGGATTGAGGCATCGCCCCAA
AGATCACGCTCATCTTCCACATCATCAGATCATGGAAATTTCATGATGCC
ACCTGTAGGACCGCAGGCCACTTGTAGTGGCATAAAGGTTCCACCTAGGT
CACCAAGGTCAACAATAGGTTCCCCAAGGCCATCAATGCCATCAAGCCCT
TCTACCAAGTCTGATGGACATCATCAGTACAAGGATATCCCTAACCCATT
AATTGCTGGAATGAGTAATGTACTCAATACCCCAAGCAGTGCAGCTTTTC
CTACTGCACCTGCCGGAAATGGTTCTGTAAAGAGTCAGCCTGGTTTGCTG
GGAATGCCTTTAAATCAGATCTTGAACCAGCACAATGCTGCCTCCTTTCC
AGCAAGTAGTTTACTCTCAGCAGCAGCCAAAGCACAGCTAGCAAATCAAA
AAAAACTTGCTGGTAAAACAGAAGCAGCAGGAACAATTCGGGAGTGTTGC
CCGCACCGGGAACATTAAAGAAACACACTTTAAAAACCTGGTTCCTCCCA
TGGCAAAATGTTTTCCCTACCGGGGAGGTCAAATGGCCGGCCCCCCTTTA
AAAAAATTGATGGTCTCCCAAAAAATCCTTTAGGAAAAAAAAGTCCCCCC
CCCCACGGTTGGTTGT

GCGTGTTCGGTGATAGCCTCTTACCCGCTGCTGTGCCGTTCCTTGCTCTT
CCCACCCCTATCCCCCCATTCTAAACACATATAATTTTTCCCCTTCTCTC
TCCCTTTTTTCTTCTTTTNCCACCCCNNNCCCCGCCCGAAAAATGACAAT
TAGACGGGGGGGNTAAGGGCCCCATGAGGNACGAGNCCCGGGNNCCCCCT
GGGGNNCTCTGTTCTTCGAAAACAATNTNNTNAGGGGNTGGGNAACACCT
AAATAGNNANAGGGTAATCCCCGGNCGGGGNAAAATTNTTCNNCANCGGN
GNNCGGNGGNAANTTAGGNNTCCNAGGGGGNAAGGGGNCCAAGTAAGNTA
AGTGTAAGGAAAGAGCCAAAACCCTTTTTTTCCCAAGGCCCTTCCCCCCA
AGGAAATCCAAAGGAAAAGGGGGCCCCAATTTTTTAAACCCTTTTAAAGC
CTCTTTTTTTTCCCCTCCCAAGCCCCAAGTATAAAAAAAGGNGTGGGAAC
CTTTTTGGGCGCCTGGGGGGGNAAAAAAAAGAAAAAAAAGCCAAAAAACC
CCCGGCCTCTTGGGAAAAAAAGGAAAAAAAAAAAACCCCCNCCCTCGGTG
TGTGGAAAAAGAGGGGGTGGTTTTTATAAAACCCCCCCCTCTTTTTTTTT
TTTTTAATAAAACACCGGGGGGTGGGGGGGNCCAATNTATATTTTAACAC
CCCCCTCGCCACANAAAAANNNANAAGGANNGGCGGCNTTTCCTCTCCCC
NCCCCCCACACNACCCGCTTGCGNTTGTTCTCTCTNTCTTCTCCTCTCTT
TCCCTCATTTCCCCCCACCACGCCNCCTCTNNCCNCCTTCNTTCTTTGTT
TGNCCTTGTTGCGTTGTGCGGNTGACGGCTGCGCTCNCTCCTTCTTCATC
CTCACTTNTCCATCCCTATTACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g20.b1 MSMg01no360_g20.b1 CHROMAT_FILE:
MSMg01no360_g20.b1 PHD_FILE: MSMg01no360_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:10 2005
         (456 letters)



>mm_chr2_49112367_49113222
          Length = 856

 Score =  855 bits (442), Expect = 0.0
 Identities = 448/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcagcattctgcttcaacctccctgtccccttctccagtgacatccccagtgcaca 66
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagcattcagcttcaacctccctgtccccttctccagtgacatccccagtgcaca 266

                                                                       
Query: 67  tgatggggactggaattggaaggattgaggcatcgccccaaagatcacgctcatcttcca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgatggggactggaattggaaggattgaggcatcgccccaaagatcacgctcatcttcca 326

                                                                       
Query: 127 catcatcagatcatggaaatttcatgatgccacctgtaggaccgcaggccacttgtagtg 186
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 327 catcatcagatcatggaaatttcatgatgccacctgtaggaccccaggccacttgtagtg 386

                                                                       
Query: 187 gcataaaggttccacctaggtcaccaaggtcaacaataggttccccaaggccatcaatgc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcataaaggttccacctaggtcaccaaggtcaacaataggttccccaaggccatcaatgc 446

                                                                       
Query: 247 catcaagcccttctaccaagtctgatggacatcatcagtacaaggatatccctaacccat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catcaagcccttctaccaagtctgatggacatcatcagtacaaggatatccctaacccat 506

                                                                       
Query: 307 taattgctggaatgagtaatgtactcaataccccaagcagtgcagcttttcctactgcac 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 taattgctggaatgagtaatgtactcaataccccaagcagtgcagcttttcctactgcac 566

                                                                       
Query: 367 ctgccggaaatggttctgtaaagagtcagcctggtttgctgggaatgcctttaaatcaga 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctgccggaaatggttctgtaaagagtcagcctggtttgctgggaatgcctttaaatcaga 626

                                         
Query: 427 tcttgaaccagcacaatgctgcctcctttc 456
           ||||||||||||||||||||||||||||||
Sbjct: 627 tcttgaaccagcacaatgctgcctcctttc 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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