ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTGGAGTACCGCTATATTGTTTTGTTTTCTGTTTTTTTTTTTTTT
CCTTTTCTGTGTAGTATACATTGTCATGCTTTAAAACACAATATCCAGGG
ATCCTAAACTCATAGAGTCATTCTTTTTCTTCTAGAACATCAATTTACAA
CTCAAATGACACAAGTATTCATTAAATACTTTAATATAAAAGGCAAAACA
CACCATTGTCATTGACTCCCAGATTGGTTCCTTGGGTCATATATAGAAGA
AATAACTTTGTCTTGCAATGTACCTGATTTCTACAAGTAAGGTAACCCAA
AGAAGACGATTCTGCCATGAAGTTCAAGGACAACTAAAGCTTGTCACCAT
GGTTTACGTGTGAGTTCACACATGATGACTCAGCTGCTCCATGCCAAACC
CATCCTGAGTCCTGTGTAAAACCACCACAGCACAGTCAACCTCACATTTT
ACAATTGCTTTCTTTATGCTGGNTTTGTTTCTTTTTGTGTTACAGTTGGC
TCTCTTTGAACTGATAAGCCATGTTAATTGTGCGAAGTGAAATCTGCCAT
TGGGATTACCATAAAAGACTTCTGATAGACACCGGTTTACACTTAAAAAA
AAACTCACAGAGATCACTGGGCATGCTTTTCCAATTCTTAACAAGTTAAG
CAAGCCCCCTGGAGGTCACTTTCTATCCCCTTGGTTTTTTTTTCTTTTTT
AAAAAAA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTATACTGGGGCATAGAACCTTCACAG
GACCAAGGGCCTCTCCTCCCATTGATGACCTACTAGATCATCCTCTGCTA
CATATGCAGCTAGAGCCATGAGTTCTACCATGTGTACTCTTTGGTTGGTG
TGTTAGTCCCAGGGAGCTGGGGGGGGGCAGTACTGGATAGTTCATATTGT
TGTTCTTCCTATGGGGCTGCAAACCCCTTCAGTTCCTTGGGTACTTTCTG
TAGCTCCTTCATTGTGGACCCTGTGCTCTGTCCAACTGATGGCTGTGAGC
ATCCACTTCTGTATTTGTCAGGCACTGGCAGAGCCTATTTGAAGCTGGAA
GATCACTTTAAATCTTGCTAGCCTACCTAAAAGAGAATAGAAAAAAGGAA
ACTTTGCATTGCCTATTTACCTTCACCTGGACAGAAAAGTTCATCCTTCC
TGTTGCCAAGATATTCCTTCCTTGGTATTAGAATTAACTTAACTATGAAC
TATATTTGGATTCCCATATAGAATGAAGATCAGCAGGTCTGAAAGGATCC
CCTTAGAATTCCACCATCCACCGGGGACTGGTGAGAATTTTTTTTTATAA
AAAAACTAACCACTATGGTTATTCTGGTTATTTTTCCCTCAATTGGAAAA
CCTTTTGTGGTAAACAAACCATACATTTTCCTCCCTCCCTTTTAAATTAA
TAATTCCCTCCTTGCCGGTTGT

Query= MSMg01no360_g21.b1 MSMg01no360_g21.b1 CHROMAT_FILE:
MSMg01no360_g21.b1 PHD_FILE: MSMg01no360_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:10 2005
         (497 letters)



>mm_chr2_47859636_47860539
          Length = 904

 Score =  911 bits (471), Expect = 0.0
 Identities = 490/500 (98%), Gaps = 7/500 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttggagt-accgctatattgttttgttttctgt------ttttttttttttt 57
           ||||||||||||||| | |||||||||||||||||||||||      |||||||||||||
Sbjct: 704 gaattcttttggagtaaacgctatattgttttgttttctgttttttgttttttttttttt 645

                                                                       
Query: 58  ccttttctgtgtagtatacattgtcatgctttaaaacacaatatccagggatcctaaact 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ccttttctgtgtagtatacattgtcatgctttaaaacacaatatccagggatcctaaact 585

                                                                       
Query: 118 catagagtcattctttttcttctagaacatcaatttacaactcaaatgacacaagtattc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 catagagtcattctttttcttctagaacatcaatttacaactcaaatgacacaagtattc 525

                                                                       
Query: 178 attaaatactttaatataaaaggcaaaacacaccattgtcattgactcccagattggttc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 attaaatactttaatataaaaggcaaaacacaccattgtcattgactcccagattggttc 465

                                                                       
Query: 238 cttgggtcatatatagaagaaataactttgtcttgcaatgtacctgatttctacaagtaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cttgggtcatatatagaagaaataactttgtcttgcaatgtacctgatttctacaagtaa 405

                                                                       
Query: 298 ggtaacccaaagaagacgattctgccatgaagttcaaggacaactaaagcttgtcaccat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggtaacccaaagaagacgattctgccatgaagttcaaggacaactaaagcttgtcaccat 345

                                                                       
Query: 358 ggtttacgtgtgagttcacacatgatgactcagctgctccatgccaaacccatcctgagt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggtttacgtgtgagttcacacatgatgactcagctgctccatgccaaacccatcctgagt 285

                                                                       
Query: 418 cctgtgtaaaaccaccacagcacagtcaacctcacattttacaattgctttctttatgct 477
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 284 cctgtgtaaaaccaccacagcacagtcaacctcacattttacaattgccttctttatgct 225

                               
Query: 478 ggntttgtttctttttgtgt 497
           || |||||||||||||||||
Sbjct: 224 ggttttgtttctttttgtgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 904
Length adjustment: 10
Effective length of query: 487
Effective length of database: 894
Effective search space:   435378
Effective search space used:   435378
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)