Query= MSMg01no360_j05.b1 MSMg01no360_j05.b1 CHROMAT_FILE:
MSMg01no360_j05.b1 PHD_FILE: MSMg01no360_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:21 2005
(541 letters)
>mm_chr2_132427292_132428233
Length = 942
Score = 861 bits (445), Expect = 0.0
Identities = 465/475 (97%), Gaps = 7/475 (1%)
Strand = Plus / Minus
Query: 68 agtactgagtagcccatgcagaatttgactgcttgccatttactctgaatttagatactt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 agtactgagtagcccatgcagaatttgactgcttgccatttactctgaatttagatactt 883
Query: 128 tgaatccagctttaagccttaagatttttgtttccagaaagcaggaaacagaatgtatac 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tgaatccagctttaagccttaagatttttgtttccagaaagcaggaaacagaatgtatac 823
Query: 188 aagatatgtagccttcacacacacacacacacacacacacacacacacacacaccccaca 247
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 822 aagatatgtagccttcacacacacacacacacacacacacacacacaca------ccaca 769
Query: 248 tgcacactcttatacacatgcacacatgcatgta-tttttttagtttattttggtcattt 306
||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 768 tgcacacacatatacacatgcacacatgcatgtattttttttagtttattttggtcattt 709
Query: 307 agagcagtctgtatcgtgccattcagagagcagcttcggctggctctcctttatgctgct 366
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 708 agagcagtctgtatcgtgccattcaaagagcagcttcggctggctctcctttatgctgct 649
Query: 367 gaaagcagttgtgaagaaacagggcagtttgattacagacctctttcatgttcctgaagt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaaagcagttgtgaagaaacagggcagtttgattacagacctctttcatgttcctgaagt 589
Query: 427 ctgggaaatataaactaatccaggaagggaaagttggatcaaggaaagaacactctttat 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctgggaaatataaactaatccaggaagggaaagttggatcaaggaaagaacactctttat 529
Query: 487 gtaataggtgaaattctatattctttggaaagaggtaactttgcaaattacaggg 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtaataggtgaaattctatattctttggaaagaggtaactttgcaaattacaggg 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space: 494892
Effective search space used: 494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_j05.g1 MSMg01no360_j05.g1 CHROMAT_FILE:
MSMg01no360_j05.g1 PHD_FILE: MSMg01no360_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:21 2005
(519 letters)
>mm_chr2_132362313_132363231
Length = 919
Score = 903 bits (467), Expect = 0.0
Identities = 506/523 (96%), Gaps = 10/523 (1%)
Strand = Plus / Plus
Query: 1 gcgttgtttttggtaaaatgaatggcaaaataagaaaaaaaaaacacgtaattacaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcgttgtttttggtaaaatgaatggcaaaataagaaaaaaaaaacacgtaattacaaaat 260
Query: 61 cagctaagactatattacctacattaccaatatgtcttcttgtcactgtgaactaacttt 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 cagctaagactatattacctacattaccaatatgtcttcctgtcactgtgaactaacttt 320
Query: 121 tttaatatcaaaaaaat-ttttttaaaaagcagcagattcaagcaatgtctttgacaact 179
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaacatcaaaaaaaaattttttaaaaagcagcagattcaagcaatgtctttgacaact 380
Query: 180 caattgtcaccacaaagactcttaacctcaaaccttttccatcattcctttaaaaagaaa 239
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 caattgtcaccacaaagactcttaacctt-----ttttccatcattcctttaaaaagaaa 435
Query: 240 tctgaagtgagttataggcagtgagttattaaagaacctgcctattcctacatctaactc 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 436 tctgaagtgagttataggcagtgagttattgaagaacctgcctattcctacatctaactc 495
Query: 300 taatcttaacccccaaccccaaccctaacctatgtcatgttttctgaattatatttaggt 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 496 taatcttaacccccaaccccaacccta-cctatgtcatgttttctgaattatatttaggt 554
Query: 360 atgtcaataaattaagattaaatgaaaacca---cttaagcttttatttaaaggtgttgt 416
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 555 atgtcaataaattaagattaaatgaaaaccatcacttaagcttttatttaaaggtgttgt 614
Query: 417 tcaacaaataccatgctgattgatactttccccgcaaaaaaatacactatattattttga 476
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 615 tcaacaaataccatgctgattgatactttccccacaaaaaaatacactatattattctga 674
Query: 477 ggttcataaatcaaaagggctaatacacacagaggggagcagg 519
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggttcataaatcaaaagggctaatacacacagaggggagcagg 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
