BAC Information

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BAC

Clone NameMSMg01-360L12
Chromosome2 (Build37)
Map Location 145,921,195 - 146,116,162
singlet/doubletdoublet
Overlap geneInsm1
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360L12.T7 (MSMg01no360_l12.b1)MSMg01-360L12.TJ (MSMg01no360_l12.g1)
ACCAG469827AG469828
length752747
length of high quality
(start - end)
465 (74 - 538)219 (329 - 547)
definitionCHROMAT_FILE: MSMg01no360_l12.b1 PHD_FILE: MSMg01no360_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:32 2005CHROMAT_FILE: MSMg01no360_l12.g1 PHD_FILE: MSMg01no360_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,921,195 - 145,921,659)(146,115,944 - 146,116,162)
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGNAAATCCGCGG
AATTCTCTGCAGTTTCCCACTTCCACGCCACTGTCTTTTCTGCTGTGAAG
GCTCCATTTGAAGATCTGTGTGGAAAGAGGTCCTACCACCAAAGGAAAGG
CCAAGAGTCGGATGGCAGATGAACTGAATCGCAGTAAATTTTTGTTCAGT
CATTTTTTTAACTTTTTTTTCTTTTTATTTCTCTTCAGCTCTCACCTGAA
ATTTAATAATCTCACCCTGATTTCAACTCATGGACTCCCAGGAAAAAGAC
TTTTGCACAACGAACAGAGGATTTTTCTAGCAAGCGAGTATGATTCCTTT
TCCTTCCTAATTGACTTCCTAGTTTGTGTGCAGTCTTTTTTTATTTTTCT
TCCTTTTTTAATGTTGAATAATAGATCTTTGAAGTGGAAAGGGGAAAGTG
GGGGACTTTCCCCCTAGAGTCCAGGAATTACCTGGGAAATACAAGTTCAA
ACCCATCAATGATCATATTAGGGTTTCTACTGCTGTGACAAAATAGTCTG
GCATAGGTTCATACTTCCCCACCACCGTTCATCACTGAAGGAAGTCAGGA
TAGGATCTTCCACAGGGCCAGGAACCTGCAGGAACCGTGACAGGACCGCT
GCCTAATGGCTTGCTTATATAACCCTGTTACACCATCCTAGGGCCGGAAC
CTTCCATTAACGGGTTAATCATCCTCTCTATTCATCCCCAATAACAAACG
CC
CCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGAAATTCCTTCCTCATATTGGAAGAATGTAAC
AGACTGTCAGGCTTCCCCCCACACACACAAAATTAAGCTGGGATAGAACT
CAGTGGCGGAGAACACACTGGTGTGTGCAAGGCTCCCAGTCCCCAGTAGC
ACCCAAAGGGGAGACAGAACGAGAAGAGTATCAGAAGCGTGGCGTGGACG
TGTCTTAGCGCTGCCCACATGCTTACTCTTCTTCACTCCATGGGCTCCAC
TGTCTGCCTGCCAGCACAGTGACCTANTTGTCAGTCACTCCAGGCTGCTC
ATACCATAGTTTTATAAAATTGTAAGAGAATGTTCAGAATTCTGTGTTTT
GGGGCCATTTATGCAAATGTATACATAAATTTAATATAAGGTTTTTGTGT
ACTAAAAAGAGATTATTCACATTTATAGTTAGCCTTCCTTTTTAGTGATC
AAAATATTGGCTGTTTTTTATGTGATCCCTTATTGAACATTTTATTTAAG
CATTTTAGAGATGAGAATCTCCAACACTGTTTCTGACTATGTGTTTCTTA
GTCACAGTCTGGCAAAGGTGTCGTTTGATGTTTGAATCGGGCAATGGACT
GATTCCTTTTTTTATCTTCAGCCTATGAAATTATTAAAATTATTTAATAA
CTTATTCTTACCCATTATTAGATTATGTTTTCTTGTGGCAAATAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_l12.b1 MSMg01no360_l12.b1 CHROMAT_FILE:
MSMg01no360_l12.b1 PHD_FILE: MSMg01no360_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:32 2005
         (465 letters)



>mm_chr2_145920995_145921859
          Length = 865

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgccactgtcttttctgctgtgaaggctccatttgaagatctgtgtggaaagaggtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgccactgtcttttctgctgtgaaggctccatttgaagatctgtgtggaaagaggtcc 260

                                                                       
Query: 61  taccaccaaaggaaaggccaagagtcggatggcagatgaactgaatcgcagtaaattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccaccaaaggaaaggccaagagtcggatggcagatgaactgaatcgcagtaaattttt 320

                                                                       
Query: 121 gttcagtcatttttttaacttttttttctttttatttctcttcagctctcacctgaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcagtcatttttttaacttttttttctttttatttctcttcagctctcacctgaaatt 380

                                                                       
Query: 181 taataatctcaccctgatttcaactcatggactcccaggaaaaagacttttgcacaacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taataatctcaccctgatttcaactcatggactcccaggaaaaagacttttgcacaacga 440

                                                                       
Query: 241 acagaggatttttctagcaagcgagtatgattccttttccttcctaattgacttcctagt 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaggaagtttctagcaagcgagtatgattccttttccttcctaattgacttcctagt 500

                                                                       
Query: 301 ttgtgtgcagtctttttttatttttcttccttttttaatgttgaataatagatctttgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgtgcagtctttttttatttttcttccttttttaatgttgaataatagatctttgaa 560

                                                                       
Query: 361 gtggaaaggggaaagtgggggactttccccctagagtccaggaattacctgggaaataca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggaaaggggaaagtgggggactttccccctagagtccaggaattacctgggaaataca 620

                                                        
Query: 421 agttcaaacccatcaatgatcatattagggtttctactgctgtga 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttcaaacccatcaatgatcatattagggtttctactgctgtga 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no360_l12.g1 MSMg01no360_l12.g1 CHROMAT_FILE:
MSMg01no360_l12.g1 PHD_FILE: MSMg01no360_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:32 2005
         (219 letters)



>mm_chr2_146115744_146116362
          Length = 619

 Score =  424 bits (219), Expect = e-123
 Identities = 219/219 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcagtcactccaggctgctcataccatagttttataaaattgtaagagaatgttcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgtcagtcactccaggctgctcataccatagttttataaaattgtaagagaatgttcaga 360

                                                                       
Query: 61  attctgtgttttggggccatttatgcaaatgtatacataaatttaatataaggtttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 attctgtgttttggggccatttatgcaaatgtatacataaatttaatataaggtttttgt 300

                                                                       
Query: 121 gtactaaaaagagattattcacatttatagttagccttcctttttagtgatcaaaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtactaaaaagagattattcacatttatagttagccttcctttttagtgatcaaaatatt 240

                                                  
Query: 181 ggctgttttttatgtgatcccttattgaacattttattt 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggctgttttttatgtgatcccttattgaacattttattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)