Query= MSMg01no360_p22.b1 MSMg01no360_p22.b1 CHROMAT_FILE:
MSMg01no360_p22.b1 PHD_FILE: MSMg01no360_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:53 2005
(539 letters)
>mm_chr2_161255736_161256674
Length = 939
Score = 1009 bits (522), Expect = 0.0
Identities = 534/538 (99%), Gaps = 2/538 (0%)
Strand = Plus / Minus
Query: 3 gaattcatcataaag-taactgaggcatttcttcagaccaagaagctcattagcaaatag 61
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaattcatcataaagat-attgaggcatttcttcagaccaagaagctcattagcaaatag 681
Query: 62 tgtgagagactcaaatgttatgaggatgtatcactgccagtgaaccttagttcagggctt 121
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtgagagactcaaatgttatgagggtgtatcactgccagtgaaccttagttcagggctt 621
Query: 122 tatggtaatttgttcagctgtatctgggttaaaggttataatgtttcccttgtttacctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatggtaatttgttcagctgtatctgggttaaaggttataatgtttcccttgtttacctc 561
Query: 182 aaatggtttatatattaagccatcaattcaaaatatctttatgtaaaaacatatgcatgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatggtttatatattaagccatcaattcaaaatatctttatgtaaaaacatatgcatgt 501
Query: 242 acttatatgttattattatgtttctaggaaatgttgtcctttcacacttttatatgtgta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acttatatgttattattatgtttctaggaaatgttgtcctttcacacttttatatgtgta 441
Query: 302 tgctatgcattgctcatctccctgcaacttctcccaatccccattctccaatttcccatt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgctatgcattgctcatctccctgcaacttctcccaatccccattctccaatttcccatt 381
Query: 362 cccaatcaatttctctttgtttagttttttatctttcagttgtttagttgcttagctttg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cccaatcaatttctctttgtttagttttttatctttcagttgtttagttgcttagctttg 321
Query: 422 tttagttcttttatttgtttagaattcaaccagaaccatctatatgaacctgatttttaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttagttcttttatttgtttagaattcaaccagaaccatctatatgaacctgatttttaa 261
Query: 482 acttaccatcagagggttgtgggctcacaagatatgtatttctcaaaattgcatacaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acttaccatcagagggttgtgggctcacaagatatgtatttctcaaaattgcatacaa 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_p22.g1 MSMg01no360_p22.g1 CHROMAT_FILE:
MSMg01no360_p22.g1 PHD_FILE: MSMg01no360_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:53 2005
(461 letters)
>mm_chr2_161083013_161083873
Length = 861
Score = 851 bits (440), Expect = 0.0
Identities = 457/464 (98%), Gaps = 3/464 (0%)
Strand = Plus / Plus
Query: 1 ttttttatggagtttgggtcttgagcattggggtgctttctgaatgttttcgaaggagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttttttatggagtttgggtcttgagcattggggtgctttctgaatgttttcgaaggagtg 257
Query: 61 tgacaaaatcaaacttgaatttcagaaggaacatgggtaggaattgtagtgactgtactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgacaaaatcaaacttgaatttcagaaggaacatgggtaggaattgtagtgactgtactg 317
Query: 121 agtagtcaggagtcaggggaatccggtggatagtgttggaagcagtgggattagcagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agtagtcaggagtcaggggaatccggtggatagtgttggaagcagtgggattagcagagg 377
Query: 181 ttgggggagctctgaatgaggtgacttaccaggatgctgtgcagtttggtcattcttgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttgggggagctctgaatgaggtgacttaccaggatgctgtgcagtttggtcattcttgcc 437
Query: 241 attctacgggggtgagattgttgattaagaataatcagccgggattattagctgggactc 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 attctacgggggtaagattgttgattaagaataatcagccgggattattagctgggactc 497
Query: 301 ctagcaggagtcggcatgatctttttttttttttttttttttttc---aaagccaaattc 357
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 498 ctagcaggagtcggcatgatctttttttttttttttttttttttttttaaagtcaaattc 557
Query: 358 tacagggcgatctattgcagtttttcagcatattttatccaattctattaggtcatttag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tacagggcgatctattgcagtttttcagcatattttatccaattctattaggtcatttag 617
Query: 418 caaataattttaattttctgcttaaatcaggattttagaagggt 461
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 618 caaataattttaattttctgcttagatcaggattttagaagggt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
