BAC Information

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BAC

Clone NameMSMg01-361B08
Chromosome2 (Build37)
Map Location 166,503,643 - 166,627,225
singlet/doubletdoublet
Overlap geneBC067047, Trp53rk
Upstream geneEya2, Prkcbp1, LOC546780, Ncoa3, Sulf2, LOC670775, Ppia-ps2_2197.1
Downstream geneArfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361B08.T7 (MSMg01no361_b08.b1)MSMg01-361B08.TJ (MSMg01no361_b08.g1)
ACCAG470102AG470103
length755749
length of high quality
(start - end)		534 (52 - 585)449 (76 - 524)
definitionCHROMAT_FILE: MSMg01no361_b08.b1 PHD_FILE: MSMg01no361_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:00 2005CHROMAT_FILE: MSMg01no361_b08.g1 PHD_FILE: MSMg01no361_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,626,696 - 166,627,225)(166,503,643 - 166,504,091)
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCAGAGGCCCCTGCCATGGCCTTAGTAGTAGGAGGTCTT
AGTCAACCCTCTGTGCAGGAAGCTGGTGGCATATGCAAAATCAAGGGTGG
GAGAGAGAGAATTGAGAAGGAAACAGAAGTGAGTTTTACAACAGCCCTCA
AAACCACTCACTGTGCAGACTGACTGGGGTATTCTTGCAACTCACACATG
GTAGGTAAGGGTGCTGGCGACATGCCCTTGAAATGATGAGCAATACTTAC
ATTCCAAACACAATACAGCTTTGTCTTGGTGTACACACAATGGCATTGGA
GTGAGTGACCAGTCCAGACACACTGGGGAATGATCAGGTGCCATCTTCAA
AGGAATGTCTCCACAATGGGTTTGCTGGCTTCCCCCAGGTGTGTGACTTC
CATGGCTTTGCCTAGGACACACAGTCTGGACTCTATGCAAGAAATGGCTT
CAGGTAACTTATCCATGGCCTATGATACTTCACTCAGTCAGCCACCAGAC
ATGGAAGAGCATGTCTTTGATTTCAGCACTCCAGAGACAGAGGCATGTGG
ATCTGTGAGTTCAAAGCCAGCCTGGTGTATATAGTGAGTTCCAGGACAGC
CAGAGCTACATAGAAAAACCCTGTCTCTAACCACTAACCAAAACAAATAA
AAATTGGTCATTGGTTAAAAGATTGTCTGCTCTTCTAAAGGCCCTGGTTC
AATTN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCTTACACAGAGAAACCCTGT
GTAAAATCAAAACAACAAAATCTGATTTTTTTTCTTCCTGCAGCTGGCCA
CCTGAGCTGCCCAGCTGTGGGCATTAGGGTTAGTGACCTTTGCTCAGGCA
AGTCACTTTGTCTCAAGCTTGGGTCAAAGGCCACACTAGGGCACCTCTTA
ACCTCCATCCCACCAAGGTCTCCAAGGACCCTCCGAGTGTAGCCCCCTGG
GTAGAAGGGCTACTTACTGTAGATGCAGAACAGCTGAGGCCACTCATAAA
TGACCCAAACAGCCCACGGTGGGGGCTGCCCTTGTCACAGAGGACGGGAA
GAAAGCGTGTAGGTTTTCCTAAGAGATTAAGCTTTCCACGTGACCGGGTC
GGATGTCAGAACACAGAATCTGCAGCCCACCTCCCCAAGAAGGGTCCGCC
CAGGGCTTCCCCAGGAGGTGTTCTCTCTCAATAAGTATCCTTCTAAACTA
GAGGATCCTCTCAAAGCTCAGAGTGTCCCTCACTCACCAGAAGGAGTCTC
CATGTGGCAAGAAGAATCCCCAGAGACACCCTTTCCCCTTAAGAAAGGGG
GGGAACCCTGGATTGGTGAAGGGCCTAAATGAGCTCCTCCAAAAAAGGCC
CTGCTTCTATACACAAAAGGGGCCAAAATGTCTGAAGGGAATTACCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_b08.b1 MSMg01no361_b08.b1 CHROMAT_FILE:
MSMg01no361_b08.b1 PHD_FILE: MSMg01no361_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:00 2005
         (534 letters)



>mm_chr2_166626492_166627425
          Length = 934

 Score =  978 bits (506), Expect = 0.0
 Identities = 524/530 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccagaggcccctgccatggccttagtagtaggaggtcttagtcaaccctctgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gaattcccagaggcccctgccatggccttagtagtaggaggtcttagtcaaccctctgtg 675

                                                                       
Query: 65  caggaagctggtggcatatgcaaaatcaagggtgggagagagagaattgagaaggaaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 674 caggaagctggtggcatatgcaaaatcaagggtgggagagagagaatggagaaggaaaca 615

                                                                       
Query: 125 gaagtgagttttacaacagccctcaaaaccactcactgtgcagactgactggggtattct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaagtgagttttacaacagccctcaaaaccactcactgtgcagactgactggggtattct 555

                                                                       
Query: 185 tgcaactcacacatggtaggtaagggtgctggcgacatgcccttgaaatgatgagcaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgcaactcacacatggtaggtaagggtgctggcgacatgcccttgaaatgatgagcaata 495

                                                                       
Query: 245 cttacattccaaacacaatacagctttgtcttggtgtacacacaatggcattggagtgag 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 494 cttacattccaaacacaatacagctttgttttggtgtacacacaatggcattggagtgag 435

                                                                       
Query: 305 tgaccagtccagacacactggggaatgatcaggtgccatcttcaaaggaatgtctccaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgaccagtccagacacactggggaatgatcaggtgccatcttcaaaggaatgtctccaca 375

                                                                       
Query: 365 atgggtttgctggcttcccccaggtgtgtgacttccatggctttgcctaggacacacagt 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 374 atgggtttgctggcttcccccaggtgtgtgacttccatggctttgcttaggacacacagt 315

                                                                       
Query: 425 ctggactctatgcaagaaatggcttcaggtaacttatccatggcctatgatacttcactc 484
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 314 ctggactctatgcaagaaatggcttcaggtaacttatccatggcctacgacacttcactc 255

                                                             
Query: 485 agtcagccaccagacatggaagagcatgtctttgatttcagcactccaga 534
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 254 agtcagccaccagacatggaagagcatgactttgatttcagcactccaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_b08.g1 MSMg01no361_b08.g1 CHROMAT_FILE:
MSMg01no361_b08.g1 PHD_FILE: MSMg01no361_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:01 2005
         (449 letters)



>mm_chr2_166503443_166504291
          Length = 849

 Score =  830 bits (429), Expect = 0.0
 Identities = 444/449 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcttacacagagaaaccctgtgtaaaatcaaaacaacaaaatctgattttttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggcttacacagagaaaccctgtgtaaaatcaaaacaacaaaatctgattttttttct 260

                                                                       
Query: 61  tcctgcagctggccacctgagctgcccagctgtgggcattagggttagtgacctttgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgcagctggccacctgagctgcccagctgtgggcattagggttagtgacctttgctc 320

                                                                       
Query: 121 aggcaagtcactttgtctcaagcttgggtcaaaggccacactagggcacctcttaacctc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcaagtcactttgtctcatgcttgggtcaaaggccacactagggcacctcttaacctc 380

                                                                       
Query: 181 catcccaccaaggtctccaaggaccctccgagtgtagccccctgggtagaagggctactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcccaccaaggtctccaaggaccctccgagtgtagccccctgggtagaagggctactt 440

                                                                       
Query: 241 actgtagatgcagaacagctgaggccactcataaatgacccaaacagcccacggtggggg 300
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 gctgtagatgcagaacagctgaggccactcataaatgacccaaacatcccacggtggggg 500

                                                                       
Query: 301 ctgcccttgtcacagaggacgggaagaaagcgtgtaggttttcctaagagattaagcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcccttgtcacagaggacgggaagaaagcgtgtaggttttcctaagagattaagcttt 560

                                                                       
Query: 361 ccacgtgaccgggtcggatgtcagaacacagaatctgcagcccacctccccaagaagggt 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacgtgaccgggttggatgtcagaacacagaatctgcagcccacctccccaagaagggt 620

                                        
Query: 421 ccgcccagggcttccccaggaggtgttct 449
           ||||||||||||| |||||||||||||||
Sbjct: 621 ccgcccagggctttcccaggaggtgttct 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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