AATTAGTCTCATGTCACNNNNNNNNNNNTNTTTCGAGAGGATCCGCGGAA
TTCTTTATCTACCAACAGCATCTGCTGTGTATTTTTAAATAACCATGCAC
TCCATAAGTAAGAGAATAAATTACTTGTGAGTTGTAACAAGAAATACCAA
GGTTTATATCTAACACAAAAGTGGCCAGGGAGAGAAAGAAGCAAGGACTA
AATGCCCGAGTTAGATAATATAAAAAGACCTTGGTGGAAATTCTGAAATA
AGTGCATCAACCGCCTCTCATTTGTCAATGGTCTTGCTTCTCCAGTGCCA
CCTCTGTGTAAATGACTAAATGTCACTGATTATGGCAATTTGTTTTCTTG
ACATTGAAACAGCTAAATTATGATCCTTATGAAATTATAGTAGGTGAGTA
TGTGAGGCATTAATTAAAATCCTGATGAGGACAAGGGTTGTGTCACATGA
GAAGTCCAAAATGAAAATCATATTTTAAATATTATGATAATGAAGTCACA
AAGACCACAATTTAAATAATCACTGAAATTATTTCTGGGTAATTTAATCT
AAGTGCCAAAAATTAATTTATCTGAATGGGCATTTTATTTCCTATTTTTA
GATAAAATAAGACTGCAGGTATTAAGTTATATTTTTAAAAAAAATCCTCC
TAGCTGCTGTACGTATCAGTATGGAGGATTTTCAAAACAAAAACAAACCA
AAATAGATCAACCATATGACCCAGCCATAGCACTCCTAGGTATTGATGCT
N

NCCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGCAAGCTGCCACACCTGAC
TTTGTGTATGTGTGTGTGTGGGGGGGGAGGGGGAATTNANCTCANNNCCT
NANNCTTGTNCNTNNACCACTTTCTCCACTCTTCTATCTCCTTCTTCCCC
CCTTCTCTTTTCCCCTACCCTTTTTTTACCCTCCTCTTTTCTCCCCCTGC
ATACTCTCCCTTTTTTCTTCTTCCTCTTTCCTCTTATTATTCTCTCCCCT
TTTTCCTCTCTCTCCCTATCTTCTTCTCATATCTTTCACCCCACCCTCCC
TCTTTCTCTTCATCTCCCCCCTTCTCTCCCTTTCTAACTTTTTTCCCCTT
CTCCCCTCCACCCCCCCCCCCCTTCTTCTCTTTTTTTTTTCCCCCTCTTT
CCACCTCTTCCCCTCTCCTTCCTCTTCTTCCTCCCTTTCTTTTCTTTCTC
TTTCTCTTTCCCTTTCCCCCCTCCCCTCTTCCTTTCCCTCTCCTTTTTCT
CCTTCCCCCCCCCCCCCTTTTCCTCCTTTCCTCTTCTCCTCTTTCTCTCT
CTTCCCCCCCCTCCTCTTTCCCCCTTTCTCCTTTCTCCCTTCCCCTTTTC
CCTCCTTTTCCCGCCACTCTTCTTCCCTCCTTATTTCCCCCTTCCTTTCC
CCTTTTTCCCCTTTCTCTCCCTCTCTCTTTTTCCCCCCTTTTCTCCCTCC
CTCCCCTTCCCCCCCCCTCCTTTCTTCCCTTCTCCCCCCATTCCCCCCCT
CTTTCTCTTTCG

Query= MSMg01no361_h11.b1 MSMg01no361_h11.b1 CHROMAT_FILE:
MSMg01no361_h11.b1 PHD_FILE: MSMg01no361_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:31 2005
         (612 letters)



>mm_chr2_106319332_106320340
          Length = 1009

 Score = 1135 bits (587), Expect = 0.0
 Identities = 606/613 (98%), Gaps = 5/613 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatctgctgtgtatttttaaataaccatgcactccataagtaagagaataaattactt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatctgctgtgtatttt-aaataaccatgcactccataagtaagagaataaattactt 259

                                                                       
Query: 61  gtgagttgtaacaagaaataccaaggtttatatctaacacaaaagtggccagggagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgagttgtaacaagaaataccaaggtttatatctaacacaaaagtggccagggagagaa 319

                                                                       
Query: 121 agaagcaaggacta-aatgcccgagttagataatataaaaagaccttggtggaaattctg 179
           |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaagcaaggac-agaatgcctgagttagataatataaaaagaccttggtggaaattctg 378

                                                                       
Query: 180 aaataagtgcatcaaccgcctctcatttgtcaatggtcttgcttctccagtgccacctct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaataagtgcatcaaccgcctctcatttgtcaatggtcttgcttctccagtgccacctct 438

                                                                       
Query: 240 gtgtaaatgactaaatgtcactgattatggcaatttgttttcttgacattgaaacagcta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgtaaatgactaaatgtcactgattatggcaatttgttttcttgacattgaaacagcta 498

                                                                       
Query: 300 aattatgatccttatgaaattatagtaggtgagtatgtgaggcattaattaaaatcctga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aattatgatccttatgaaattatagtaggtgagtatgtgaggcattaattaaaatcctga 558

                                                                       
Query: 360 tgaggacaagggttgtgtcacatgagaagtccaaaatgaaaatcatattttaaatattat 419
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cgaggacaagggttgtgtcacatgagaagtccaaaatgaaaatcatattttaaatattat 618

                                                                       
Query: 420 gataatgaagtcacaaagaccacaatttaaataatcactgaaattatttctgggtaattt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gataatgaagtcacaaagaccacaatttaaataatcactgaaattatttctgggtaattt 678

                                                                       
Query: 480 aatctaagtgccaaaaattaatttatctgaatgggcattttatttcctatttttagataa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aatctaagtgccaaaaattaatttatctgaatgggcattttatttcctatttttagataa 738

                                                                       
Query: 540 aataagactgcaggtattaagttatatttttaaaaaaaatcctcctagctgctgtacgta 599
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 739 aataagactgcaggtattaagttatatttttaaaaaa--tcctcctagctgctgtacgta 796

                        
Query: 600 tcagtatggagga 612
           |||||||||||||
Sbjct: 797 tcagtatggagga 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1009
Length adjustment: 10
Effective length of query: 602
Effective length of database: 999
Effective search space:   601398
Effective search space used:   601398
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)