Query= MSMg01no361_m09.b1 MSMg01no361_m09.b1 CHROMAT_FILE:
MSMg01no361_m09.b1 PHD_FILE: MSMg01no361_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:54 2005
(292 letters)
>mm_chr2_134691879_134692571
Length = 693
Score = 513 bits (265), Expect = e-150
Identities = 283/289 (97%), Gaps = 1/289 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtaataaccaacacttagatatctatgacatagcttggccatttgttcttaat 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtaataaccaacacttagatatctgtgacatagcttggccatttgttcttaat 264
Query: 65 gtacatatttaaaagcaaaagatctactaatgtaccattcaaaatatctttcaagttcta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtacatatttaaaagcaaaagatctactaatgtaccattcaaaatatctttcaagttcta 324
Query: 125 cgcaagcctgccacatttttcagattaaggaatggaccacctttcgtcattgttcagcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgcaagcctgccacatttttcagattaaggaatggaccacctttcgtcattgttcagcct 384
Query: 185 tattaaaatagaccactcttgatttggattgggtttgttctgcctggtttggaactttac 244
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 385 tattaaaatagaccactcttgatttggattgggtttgtcctgcctggtttggaattttac 444
Query: 245 acacttgaaattataaatggtatattgttgggttttttt-gggaggtgg 292
|||||||||||||||||||||||||| |||||||||||| ||| |||||
Sbjct: 445 acacttgaaattataaatggtatattattgggttttttttggggggtgg 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space: 193572
Effective search space used: 193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no361_m09.g1 MSMg01no361_m09.g1 CHROMAT_FILE:
MSMg01no361_m09.g1 PHD_FILE: MSMg01no361_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:55 2005
(502 letters)
>mm_chr2_134770594_134771497
Length = 904
Score = 849 bits (439), Expect = 0.0
Identities = 491/520 (94%), Gaps = 18/520 (3%)
Strand = Plus / Minus
Query: 1 tacacaacctcttcttcagcaaaggaaacctccacaaggtcatgcccattcagcagggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tacacaacctcttcttcagcaaaggaaacctccacaaggtcatgcccattcagcagggct 735
Query: 61 tcctcactgagagggcaagctgtat------------------ctgagcagctaatactg 102
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 734 tcctcactgagagggcaagctgtatactaagcaatgctgtatactgagcagctaatactg 675
Query: 103 ctgctgccatgcaacctaagcaatggagcttgggcaggaagtgagctctagcacgtagtg 162
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 674 ctgctgccgtgcaacctaagcaatggagcttgggcaggaagtgagctctagcacttagtg 615
Query: 163 agagccgactggacctcagcatcaggacagcatgtgtattctgtggcgaagagttgcagc 222
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aaagcccactggacctcagcatcaggacagcatgtgtattctgtggcgaagagttgcagc 555
Query: 223 tctctgagcactcacaggcaacattccataaaaccacgtctctttttgagagaaggaagg 282
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 554 tctctgagcactcacaggcaacattccataaaaccacatctctttttgagagatggaagg 495
Query: 283 atataggctctcgaactagaccatcttattaaattaaatttcccctttattagttaaagc 342
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 494 atataggctctcgaactagaccatcttattaagttaaatttcccctttattagttaaagc 435
Query: 343 catgagtcttgattcatgttaataacctctccacacttcatctttccacctaaaatacaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 434 catgagtcttgattcatgttaataacctctccacacttcatctttccacctaaaatataa 375
Query: 403 aatcttcaccttttgttttctataataatcaattgagttaatgcactagtgtgtactgaa 462
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 374 aatcttcaccttttgttttctataataatcaattgagttaatgcactagtgtttactgaa 315
Query: 463 nataaggccttgagcatgagaagaaattaaagagataata 502
||||||||||| |||||||||||||||||||||||||||
Sbjct: 314 aataaggccttgggcatgagaagaaattaaagagataata 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 904
Length adjustment: 10
Effective length of query: 492
Effective length of database: 894
Effective search space: 439848
Effective search space used: 439848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
