Query= MSMg01no361_p20.b1 MSMg01no361_p20.b1 CHROMAT_FILE:
MSMg01no361_p20.b1 PHD_FILE: MSMg01no361_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:11 2005
(462 letters)
>mm_chr2_35108364_35109225
Length = 862
Score = 841 bits (435), Expect = 0.0
Identities = 450/455 (98%)
Strand = Plus / Minus
Query: 8 ggaattctagtccttaccgacagctttaccaggcagaaggcagaggcatctttggaaggc 67
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ggaattctagtccagaaagacagctttaccaggcagaaggcagaggcatctttggaaggc 603
Query: 68 tggaggagcaagaatggaccagctctttttcaaagacttaggtgtatgggaaatggaggg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tggaggagcaagaatggaccagctctttttcaaagacttaggtgtatgggaaatggaggg 543
Query: 128 agacagagccgaggaaggagaggaatctgcctcccttctgggatggccacaaccagctca 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agacagagccgaggaaggagaggaatctgcctcccttctgggatggccacaaccagctca 483
Query: 188 caccagctctcgagagttgattagtaaatctctcagaatgttttaaaaccaattttaaaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 caccagctctcgagagttgattagtaaatctctcagaatgttttaaaaccaattttaaaa 423
Query: 248 caattcatataaataataatttgtgtgaacttgtaattaaataaattacacaggtaattc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caattcatataaataataatttgtgtgaacttgtaattaaataaattacacaggtaattc 363
Query: 308 attctcaaagcatgatttccaagttaaatttgctatagttcactaccaactagactttaa 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 attctcaaagcatgatttccaagttaaatttgctatagttcactaccaactagactttaa 303
Query: 368 ggtcatttcggctattttgtcatatgatacaaatgttacatgtatttgggcactaattca 427
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggtcatttcggctatttcgtcatatgatacaaatgttacatgtatttgggcactaattca 243
Query: 428 tgtctctttccaactcaaccttccctgatatcatg 462
|||||||||||||||||||||||||||||||||||
Sbjct: 242 tgtctctttccaactcaaccttccctgatatcatg 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_p20.g1 MSMg01no361_p20.g1 CHROMAT_FILE:
MSMg01no361_p20.g1 PHD_FILE: MSMg01no361_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:11 2005
(510 letters)
>mm_chr2_34913682_34914591
Length = 910
Score = 949 bits (491), Expect = 0.0
Identities = 506/511 (99%), Gaps = 2/511 (0%)
Strand = Plus / Plus
Query: 1 ttaacctctacaagaggtagatgatttagactgcagagctatcctcattttatgcataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaacctctacaagaggtagatgatttagactgcagagctatcctcattttatgcataat 260
Query: 61 cagagcttaatttgctcaaggtcacttggcttataaatgactgagatgggactttgcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagcttaatttgctcaaggtcacttggcttataaatgactgagatgggactttgcatc 320
Query: 121 caggtctggttcggttcctatgtgtcactgagggcaacagttcaactgttggtcaaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggtctggttcggttcctatgtgtcactgagggcaacagttcaactgttggtcaaccat 380
Query: 181 agattgtcctcttgttttccccatgcaattgatacaagaagggaacttcctttatgcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattgtcctcttgttttccccatgcaattgatacaagaagggaacttcctttatgcaag 440
Query: 241 cttttgaaacacggttctaaagagtgttgtgttaacttagaagtgcacatgagtttatta 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 cttttgaaacacggttctaaagagtgttctgttaacttagaagtgcacatgagtttatta 500
Query: 301 acaactcattacaagaacattaagtttgaatagtgagagctgcatatgtgagtacatagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaactcattacaagaacattaagtttgaatagtgagagctgcatatgtgagtacatagg 560
Query: 361 gaaataaatatgctaaccccaaaaattaagtctctcacaggctcagggtgcacccc-cac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 561 aaaataaatatgctaaccccaaaaattaagtctctcacaggctcagggtgcacccctccc 620
Query: 420 acacacaccacctaagaatcattgcaagcttctaatgacattaggacatttttaaagcca 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 -cacacaccacctaagaatcattgcaagcttctaatgacattaggacatttttaaagcca 679
Query: 480 caaaaatcactagatctttcgtaatgaagat 510
|||||||||||||||||||||||||||||||
Sbjct: 680 caaaaatcactagatctttcgtaatgaagat 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
