Query= MSMg01no362_b13.b1 MSMg01no362_b13.b1 CHROMAT_FILE:
MSMg01no362_b13.b1 PHD_FILE: MSMg01no362_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:20 2005
(498 letters)
>mm_chr2_101743410_101744306
Length = 897
Score = 893 bits (462), Expect = 0.0
Identities = 486/494 (98%), Gaps = 1/494 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcccttttttccttcccactcctttaacctgctgagaccctacattcctgttt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcccttttt-ccttcccactcctttaacctgctgagaccctacattcctgttt 263
Query: 65 ctcgggttcctaccacccattgtcattcacaaagaactcaatacaaggagttttatgggt 124
||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 264 ctcaggttcctaccacccattgccattcacaaagaactcaatacaaggagctttatgggt 323
Query: 125 gtctgggagattggatattgtatttgaatgcaatgacactggtgtgaggtcacactgaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtctgggagattggatattgtatttgaatgcaatgacactggtgtgaggtcacactgaac 383
Query: 185 ttaacctggaaaagtctgcatacgtctggtgcccttgcataatctgcttgtataagggac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaacctggaaaagtctgcatacgtctggtgcccttgcataatctgcttgtataagggac 443
Query: 245 ttgattgtgttgctgttgtttgctttgtttgcaagaatagacttgttttctggtactata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgattgtgttgctgttgtttgctttgtttgcaagaatagacttgttttctggtactata 503
Query: 305 ttttgggttgggtcaatacgatttcagaagaacctctcccccattgatctctaaggaggt 364
||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 504 tttcgggttgggtcaatacgatttccgaagaacctctcccccactgatctctaaggaggt 563
Query: 365 tcttgtttggtgattttctggtcccttccccagggtgtgggaatatttgggatgtagact 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcttgcttggtgattttctggtcccttccccagggtgtgggaatatttgggatgtagact 623
Query: 425 ctgtccatcaaagggtgacaatcaatctctggggtgacagtgctcctggctggccaccac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgtccatcaaagggtgacaatcaatctctggggtgacagtgctcctggctggccaccac 683
Query: 485 attccacttgcaca 498
||||||||||||||
Sbjct: 684 attccacttgcaca 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 897
Length adjustment: 10
Effective length of query: 488
Effective length of database: 887
Effective search space: 432856
Effective search space used: 432856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_b13.g1 MSMg01no362_b13.g1 CHROMAT_FILE:
MSMg01no362_b13.g1 PHD_FILE: MSMg01no362_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:20 2005
(565 letters)
>mm_chr17_17596917_17597888
Length = 972
Score = 975 bits (504), Expect = 0.0
Identities = 553/572 (96%), Gaps = 7/572 (1%)
Strand = Plus / Minus
Query: 1 aggctggaatatcaaagact---gtgtggtcagaagcatggaaagaagtattcaataaac 57
|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
Sbjct: 772 aggctggaatatcaaagactggagtgtggtcagaagcatgaaaagaagtattaaataacc 713
Query: 58 tagaactgcctagaatttgctcaatcgttctgcattacagcggaactctttaacaaacaa 117
||||||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||
Sbjct: 712 tagaactgcctagaatttgctcagtcgttctgcaatacagtggaactttttaacaaacaa 653
Query: 118 ggatctcaggtgattctgtgtacatgtttcacatacagtatat---aaaaggagtccacc 174
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 652 ggatctcaggtgattctgtgtagatgtttcacatacagtatataaaaaaaggagtccacc 593
Query: 175 ctgggcagagtctggatcagatgacttgttagttatattgaaaaacaccaaggagattag 234
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 592 ctgggcagagtctggatcagatgacttgttagctatattgaaaaacaccgaggagattag 533
Query: 235 actagtttgtgatagcatttccaagggtaattaggccatgagagctctgacctaactaat 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 actagtttgtgatagcatttccaagggtaattaggccatgagagctctgacctaactaat 473
Query: 295 ggattaatgccttcacggatttataataggacggtattgttgggagttcataggggatgg 354
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 472 ggattaatgccttcacggatttataataggatggtattgttgggagttcataggggatgg 413
Query: 355 acactggttggggtatgtcactgaaagtgtgtctgtcggggctgtattttgccatggttt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 acactggttggggtatgtcactgaaagtgtgtctgtcggggctgtattttgccatggttt 353
Query: 415 cttcttgtattcatctttttt-gttttttagctgtcaatgtaaactgaccctcctcccct 473
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttcttgtattcatctttttttgttttttagctgtcaatgtaaactgaccctcctcccct 293
Query: 474 gtgtatgtatgcgcacacatctgtgtgtacacttttcctcttttagttcggagtgacaga 533
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtgtatgtgtgcgcacacatctgtgtgtacacttttcctcttttagttcggagtgacaga 233
Query: 534 gaaaacatgttcaaggaaaagtatctactcat 565
||||||||||||||||||||||||||||||||
Sbjct: 232 gaaaacatgttcaaggaaaagtatctactcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 972
Length adjustment: 10
Effective length of query: 555
Effective length of database: 962
Effective search space: 533910
Effective search space used: 533910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
