Query= MSMg01no362_e06.b1 MSMg01no362_e06.b1 CHROMAT_FILE:
MSMg01no362_e06.b1 PHD_FILE: MSMg01no362_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:34 2005
(529 letters)
>mm_chr2_43828504_43829426
Length = 923
Score = 913 bits (472), Expect = 0.0
Identities = 508/522 (97%), Gaps = 6/522 (1%)
Strand = Plus / Minus
Query: 5 gaattctgtcatatcatgtgcattggacagaacacatggtatggatttacacttattttt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gaattctgtcataacatgtgcattggacagaacacatggtatggatttacacttattttt 661
Query: 65 aactaggaaaactatttttaatattcaaaacatcatcaggctaaaagcaatttacatttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aactaggaaaactatttttaatattcaaaacatcatcaggctaaaagcaatttacatttc 601
Query: 125 agtttttgatactttatctgattttaatctttgcataattataataattgttcttgcaac 184
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 600 agtttttgatactttatctgattttaacctttgcataattataat---tgttcttgcaac 544
Query: 185 cttgatataatttggatcccccaattttattgaataaacagaaggaagaaaattatgtaa 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cttgatataatttggatcccc-aattttattgaataaacagaaggaagaaaattatgtaa 485
Query: 245 tatttcttcgctgagaagtcaggaagagatgctctgtatgctgttatttagcgttagtgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 484 tatttcttcgctgagaagtcaggaagagatgctctgtatgctgttatttagtgttagtgc 425
Query: 305 agaataagcaagattttgaaacttcaatgcacaaggaaactaaagcacagtcagtctgtg 364
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 424 agaataagcaagattttgaaacttcaatgcacaaggaaactaaagca--gtcagtctgtg 367
Query: 365 aaggacacaggaagagatgtgatctgacgtggaaacattatgtagaacttagaaaaaatt 424
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 366 aaggacacaggaagagatgtgatctgacatggaaacattatgtagaacttagaaaaaaat 307
Query: 425 cagaaaatatattagctatgtgtttgtaggtgttatttatgctagagagaatgtcatgag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cagaaaatatattagctatgtgtttgtaggtgttatttatgctagagagaatgtcatgag 247
Query: 485 ttgcctacattttatgtacatgtatatgtgtgagtatgtgtg 526
|||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 246 ttgcctacattttatgtacatgtataggtgtgtgtgtgtgtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 923
Length adjustment: 10
Effective length of query: 519
Effective length of database: 913
Effective search space: 473847
Effective search space used: 473847
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_e06.g1 MSMg01no362_e06.g1 CHROMAT_FILE:
MSMg01no362_e06.g1 PHD_FILE: MSMg01no362_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:34 2005
(488 letters)
>mm_chr2_43628066_43628954
Length = 889
Score = 899 bits (465), Expect = 0.0
Identities = 483/489 (98%), Gaps = 1/489 (0%)
Strand = Plus / Plus
Query: 1 tgattacacattacattcactgcttgttggactgttgcatggtgagaggtgaaattgagc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgattacacatcacattcactgcttgttggactgttgcatggtgagaggtgaaattgagc 260
Query: 61 tcagagcaccacagaattgagtctgaggagcaaagccagcgcttgtgtggcttttatgaa 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tcagagcaccacagaattgagtctgaggagcaaagccagtgcttgtgtggcttttatgaa 320
Query: 121 gtgtttcctcatcgctgcttcctgtttttaaaacaggactcaaagtggaacttgagcgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtttcctcatcgctgcttcctgtttttaaaacaggactcaaagtggaacttgagcgat 380
Query: 181 accacaagatactcacgctttcctttagtacatacgaaatcaggaagtctagaggacttg 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 accacaagatactcacgctttcccttagtacatacgaaatcaggaagtctagaggacttg 440
Query: 241 gtaaaccaggcttaagggattgattgccacttaaatttctaaattggtaatttgggattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaaccaggcttaagggattgattgccacttaaatttctaaattggtaatttgggattt 500
Query: 301 ggggaagaaatttatgaaatgagtagctatcccaggcatatacaaaattgccttgttct- 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggaagaaatttatgaaatgagtagctatcccaggcatatacaaaattgccttgttctc 560
Query: 360 tccatatctttgttagacgtttatcattattgagtacctcctgccaaatgcatcagtttt 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatatctttgttagacgtttatcattattgagtacctcctgccaaatgcatcagtttt 620
Query: 420 ctcatatgtaataaaaatgatgatttaagtgaatgacatagttgaggataatccattagg 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 ctcatatgtaataaaaatgatgatttaagtgaatgacatagtcgaggataatccattagg 680
Query: 480 tatctgagc 488
|||||||||
Sbjct: 681 tatctgagc 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space: 420162
Effective search space used: 420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
