BAC Information

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BAC

Clone NameMSMg01-362H01
Chromosome2 (Build37)
Map Location 36,540,758 - 36,541,264
singlet/doubletsinglet
Overlap genenone
Upstream geneDab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345
Downstream geneOlfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362H01.T7 (MSMg01no362_h01.b1)MSMg01-362H01.TJ (MSMg01no362_h01.g1)
ACCAG471125AG471126
length754763
length of high quality
(start - end)
511 (45 - 555)465 (75 - 539)
definitionCHROMAT_FILE: MSMg01no362_h01.b1 PHD_FILE: MSMg01no362_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:48 2005CHROMAT_FILE: MSMg01no362_h01.g1 PHD_FILE: MSMg01no362_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGTGAGCCCTGATTTTGAAAACCATGTAAAGAAACAATGATGCA
ATTCCTGTCCCCAAATCCAAATTAGAAGCATGTAGAATAAAATTGTTATG
TTGTCATTGACTCCCTTAGGGAAAGAATAATTTTGAAGCAAAAGTGAGAG
TCCCTTCACCTTTGAGAAACAATGGTAGCAATCATAACAAGATTCCCCAT
CATTTTGTCCTATTTAAAATAGTATGGGAAAACATAAATTTTTCTTATAT
TTATGCACTGGATGCTGAAACCTCAACAATAATTCTATTTGAAAATGATG
CTTCTAATAAACTAATGAATATTAATAAGAATTTGGTTTTTCTCTTAAAA
GAGATACCAGATTGCATCTGCCATCCCTCAAACTGTGGCCATAGGAAGCA
GACATCAATCTGTAGTCAGTAAGTTAATGACAGTATTGCAACATCAGGAG
GTAACAGAGAAAAACTTTTTATCAACCTTTGATTTTGAACTTCTAGCTTC
CAGAACAGTGGAACATGTAATTCCATTAAGCTATTACGTGGCATATTGTT
CTGACAGTGCTTGGGTATAAGCAATGTAAATATCTGCTTATTTATAAAAG
AATATGATTAGAGATCCTCTGCTTTACTAGATGCCTCACATACTGTTTTA
AGTCTTATTGGGCTTTCTACTATTCCAATTGTCCCTCTTTTTCCATTTCA
TTGC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAATTGAGGAAACTCAAAGGGCTCA
GAAACACCTAAAGAAATACTGAACATCCTTAGTCATCAGGGAAATGCAAA
TCCAAACGACCCTTAGATTCTGCCTCACACCAGTCAGAATGGCTAAACTG
AAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ATTCCTCCATTGCTGGTGGGATTGTAAGCTGGTACAGCCACTCTAGAAAT
CAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCTGAGGACCCA
GCTAGATATACCCAGCATATACCCAGAAGATACTCCAACATGTAAAAAGG
ACACATGTTCCATTATGTTCTTAGCAGCCATATTTATAATAGCCAGAGTC
CCTCAATAGAGGAATGGATACAGAAAATATGGTATATTTACATAATGGAG
TACTACTCAGCCATTAAAAATAGTGACTTAGTGAAATTCACAGGCAAATG
GATGGAACTTGAGAATATCATCCTGAGTGAGGCAACTCAGTCACAAAGGA
AGAAACACAGCATGTACTCACTGATAAGTGGATATTAACCCCTAAGCTCT
GAATACCCAAGATTCCATTCTCAGACCATATTAAGTCTAAAAAAATGGGA
GACCTAAATGTTGAAGGCTTCTTTGGTTTTCCTAAATGGGAACCTAATAC
TTTCTGCAGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_h01.b1 MSMg01no362_h01.b1 CHROMAT_FILE:
MSMg01no362_h01.b1 PHD_FILE: MSMg01no362_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:48 2005
         (511 letters)



>mm_chr2_36540554_36541464
          Length = 911

 Score =  957 bits (495), Expect = 0.0
 Identities = 504/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgtgagccctgattttgaaaaccatgtaaagaaacaatgatgcaattcctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattctatgtgagccctgattttgaaaaccatgtaaagaaacaatgatgcaattcctgt 652

                                                                       
Query: 65  ccccaaatccaaattagaagcatgtagaataaaattgttatgttgtcattgactccctta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ccccaaatccaaattagaagcatgtagaataaaattgttatgttgtcattgactccctta 592

                                                                       
Query: 125 gggaaagaataattttgaagcaaaagtgagagtcccttcacctttgagaaacaatggtag 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 591 gggaaagaataattttgaagcaaaagtgagagttccttcacctttgagaaacaatggtag 532

                                                                       
Query: 185 caatcataacaagattccccatcattttgtcctatttaaaatagtatgggaaaacataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 caatcataacaagattccccatcattttgtcctatttaaaatagtatgggaaaacataaa 472

                                                                       
Query: 245 tttttcttatatttatgcactggatgctgaaacctcaacaataattctatttgaaaatga 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tttttctaatatttatgcactggatgctgaaacctcaacaataattctatttgaaaatga 412

                                                                       
Query: 305 tgcttctaataaactaatgaatattaataagaatttggtttttctcttaaaagagatacc 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgcttctaataaactaatgaatagtaataagaatttggtttttctcttaaaagagatacc 352

                                                                       
Query: 365 agattgcatctgccatccctcaaactgtggccataggaagcagacatcaatctgtagtca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agattgcatctgccatccctcaaactgtggccataggaagcagacatcaatctgtagtca 292

                                                                       
Query: 425 gtaagttaatgacagtattgcaacatcaggaggtaacagagaaaaactttttatcaacct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtaagttaatgacagtattgcaacatcaggaggtaacagagaaaaactttttatcaacct 232

                                      
Query: 485 ttgattttgaacttctagcttccagaa 511
           |||||||||||||||||||||||||||
Sbjct: 231 ttgattttgaacttctagcttccagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)