BAC Information

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BAC

Clone NameMSMg01-362I02
Chromosome2 (Build37)
Map Location 86,343,352 - 86,343,781
singlet/doubletsinglet
Overlap genenone
Upstream gene4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1
Downstream geneGA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362I02.T7 (MSMg01no362_i02.b1)MSMg01-362I02.TJ (MSMg01no362_i02.g1)
ACCAG471175AG471176
length783763
length of high quality
(start - end)		433 (47 - 479)529 (75 - 603)
definitionCHROMAT_FILE: MSMg01no362_i02.b1 PHD_FILE: MSMg01no362_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:54 2005CHROMAT_FILE: MSMg01no362_i02.g1 PHD_FILE: MSMg01no362_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTATAAACTATTACAGGTTAAAGAAATGTAATTCTTTCATTTTT
AATATTTAATATTCTGTATTTAGTATACATATATAACACACCTGTATATG
GCTTTCAAAACAGAAATAGACAAAGTTATTCAAGAATGGTTCTGATGTAG
ATTTGTGTTACAAAATAACATTATTTGATGTTTACCAGTATTTGCTTTTG
TAACTGTAGGAGTTATGTCCTCCCCTCAGATCAGGTGACAGCAACCCAAT
TGAACTCTAAAATATCCTAATTCATTAAATCGGACCTTAAAAATACTAGT
GAATTCTTTACTGCTTACAAGGTTAACAATCCCATGGGGACATAGCGATA
ATGTGTAAGTACACAATAAATAAAAATATATTACTAAGTAGAGGTGGGGA
TATAATTTATTGACATGGACATTATAATGTTTACAAAATATTTGCTGACA
CTTATGTGAATGTTTATTGCTCTTTGAAATTCTTATTTCATGTTTCTGTA
GCAATACTCGCCTACTATAATGCCTCCACTACTTATGTCTCCATAGTTAA
CAACATTTAATTCTGCTATATTGGCTATCTACCTCTTTATCAACTCCCTT
TCTCTCTTCATGGCCACACCGAATTATTTTATTGTTTAATCTCTTCTTAC
CTCTTCACCCCCACCGCCCCCACTATTGCCTAATACTTTTTGCCTCTCCT
CACCACAACTCTTCTTACTCCCTCCCCTCCCCT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCTAAAAATGGCTATAAGAATGAG
TAGATAAGAAAAGAGGAGTACCACGAGAGATGAAACCAAATTAAACCCTG
CTGAAATCAATATTATAATTTCAATATCATGTGTATTAGAACAGAGCAAT
GATATTAAAGGGAGACTATCGCAGAAATGACTAACGATCCTGTAATCACA
AAAAGGTAAAGCAAAAATTTTTATAGTTATTAGAAGAGAAATAATGACAC
TATAGAAATAAGGAACTGCCACTAGGACCCAGCATACCCTATGGGACATG
ATGACAGTATAGAGTAGAGGCTTACAGATGGCCACATAGCGGTCATAGGA
CATTGCAGAGAGAATAAAGAGTTCACAAATGATGAACACAAGAAAGAAAG
TTAGCTGTATTGCACAAAGATGATTACTGATTGTATTCTGATTGACAACA
AAATTTTCCAGCATTTTGGGTCCCACAGCTGTAGAATAACCAAGATCAGT
GATAGCCAGATGTCTGAGAAAGAAGTACATGGGTGTTTGCAATCGGGAGT
CCACCATGGTAAGGATGATCATGCCCATGTTGCCCAACAGTGAGATCAGA
TAGATGATGAGCAACAAGCCGAACAATGGAGCCTGAAGCTCAAGGCTGTC
AGTGATGCCCATCAGTATGATTTCAGTCTCTATTGTGGAGGTGGGGTTTC
CCCATCTAGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_i02.b1 MSMg01no362_i02.b1 CHROMAT_FILE:
MSMg01no362_i02.b1 PHD_FILE: MSMg01no362_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:54 2005
         (433 letters)



>mm_chr2_86343149_86343981
          Length = 833

 Score =  777 bits (402), Expect = 0.0
 Identities = 423/430 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttataaactattacaggttaaagaaatgtaattctttcatttttaatatttaa 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ggaattcttataaactactacaggttaaagaaatgtaattctttcatttttaatatttaa 574

                                                                       
Query: 64  tattctgtatttagtatacatatataacacacctgtatatggctttcaaaacagaaatag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tattctgtatttagtatacatatataacacacctgtatatggctttcaaaacagaaatag 514

                                                                       
Query: 124 acaaagttattcaagaatggttctgatgtagatttgtgttacaaaataacattatttgat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 513 acaaagttattcaagaatggttctgatgtagatttgtgttacaaaataatattatttgat 454

                                                                       
Query: 184 gtttaccagtatttgcttttgtaactgtaggagttatgtcctcccctcagatcaggtgac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtttaccagtatttgcttttgtaactgtaggagttatgtcctcccctcagatcaggtgac 394

                                                                       
Query: 244 agcaacccaattgaactctaaaatatcctaattcattaaatcggaccttaaaaatactag 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 393 agcaacccaattgaactctaaaatatcctacttcattaaatcggaccttaaaaatactag 334

                                                                       
Query: 304 tgaattctttactgcttacaaggttaacaatcccatggggacatagcgataatgtgtaag 363
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 333 tgaattctttactgctttcaaggttaacaatcccatggggacatagcgataatgagtaag 274

                                                                       
Query: 364 tacacaataaataaaaatatattactaagtagaggtggggatataatttattgacatgga 423
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 273 tacacaataaataaaaatatattacaaagtagaggtggggatataatttattgacatggg 214

                     
Query: 424 cattataatg 433
           ||||||||||
Sbjct: 213 cattataatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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