BAC Information

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BAC

Clone NameMSMg01-362J20
Chromosome2 (Build37)
Map Location 87,812,156 - 87,812,626
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157
Downstream geneOlfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362J20.T7 (MSMg01no362_j20.b1)MSMg01-362J20.TJ (MSMg01no362_j20.g1)
ACCAG471258AG471259
length760750
length of high quality
(start - end)		418 (51 - 468)467 (83 - 549)
definitionCHROMAT_FILE: MSMg01no362_j20.b1 PHD_FILE: MSMg01no362_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:03 2005CHROMAT_FILE: MSMg01no362_j20.g1 PHD_FILE: MSMg01no362_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTAGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTAGCTCTGAGCCCCATATTTTAAGGGAGTTATTT
GATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGCATATTAG
TCCCCTATCTGATTTAAGATAGGTAAAGATTCTTTCCCAATCTGTTGGTG
GCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGT
TTCATGAGGTCCCATTTGTCAATCCTCAATCTTACAGCACAAGCCATTGC
TGTTCTATTCAGGATTTTTTCCCCTGTGCCCATATCTTCAAGCCTTTTCC
CCCATACCATTTTACTCCCAGGTCCCTCCATACCTGTTTGTGGTTGCTTT
CTTCTCCCTCCCAAGTCTGACTGAGGCATCCTCACTTGGGCCCTTCAGCT
TGTTGACCTTTTTGAGTTCTGTGGACTGCACCTTGGCTATCCATCACTTT
CTTATTGCTTTTTATCCGCCTATTATTGTGGACTTTCTCTGCCCCGTTTC
TTTGTTTTCGCCCTCCCTTCCTCTTTTTTTATCTCTTCTAGCCCTTCCCC
TCACCTTGCTGACTCCCTTATGAGATTTCTTTCTCATAAACTTAAATCCT
TTCTTCCCTTTTTTTTTTTCTACCCATCTTCCTCGCCCTCTATTTTTTTC
ATCACCTTCTCTATCCCCTCCCCTTTTTCTCTATACCTACTCATTTCTTC
TCACTCCCTG

NNTTTTCGAAGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATTGAGAAAAGGCTA
GCCACAAACATATTCTGATTATCCAAACATTTTCATAGCAAATAAGTACA
TGAAACAATTATATTTAGTAAGAACATAAAACAATAACATATTGATAAGA
AAATGACATTGTGAAACTCATATCTTTGAATATTCATTTAATTATCAGGA
ATTGTAAGGGAAGAAGACACATTGTTAGATTTTTATTTAATTTTTTAAAT
AAAATGTGACCATCTCTACCCCAAGCAAGCATGGTAAAATAAATTTAAAC
TGTTTTGTTTCACTTTTTAAAAAAGGAAAGTAAACATGTTTTTATTCATC
AGAAGGCACTAGTAGCAGACAAAAAATAATAACTGCATTCAAGTCAAGCT
TACTGAGTTTATTGACATTATTTAGGTGACCATGTCTGAGGAATAAACTC
GAAGCCAGCCATGTCACTGAAAACTTTGTTCATGAAGGCACATTTCCAGA
TACATGGGATTCAGCCTGGAGATCTCCACTGTTTTCTACACAGAACCCAC
CTTGCGTGTGAACTTGAAATTTCTATGGCTATTACCCCCGAAGAAGGGAT
ACAATCGACCCTTTGGAAGAAAAAATTCCGGAAACCTGGCTGGAAATGGA
TTTGGCCTCGATCTGGCCCCACCCGAAATCCCTCCTTTCCCCCCCATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_j20.g1 MSMg01no362_j20.g1 CHROMAT_FILE:
MSMg01no362_j20.g1 PHD_FILE: MSMg01no362_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:03 2005
         (467 letters)



>mm_chr2_87811959_87812826
          Length = 868

 Score =  812 bits (420), Expect = 0.0
 Identities = 458/472 (97%), Gaps = 6/472 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actattgagaaaaggctagccacaaacatattctgattatccaaacattttcatagcaaa 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 actattgagagaaggctagccacaaacatattctgattatccaaacattttcatagcaaa 257

                                                                       
Query: 61  taagtacatgaaacaattatatttagtaagaacataaaacaataacatattgataagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 taagtacatgaaacaattatatttagtaagaacataaaacaataacatattgataagaaa 317

                                                                       
Query: 121 atgacattgtgaaactcatatctttgaatattcatttaattatcaggaattgtaagggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atgacattgtgaaactcatatctttgaatattcatttaattatcaggaattgtaagggaa 377

                                                                       
Query: 181 gaagacacattgttagatttttattta---attttttaaataaaatgtgaccatctctac 237
           |||||||||||||||||||||||||||   |||||||  |||||||||||||||||||||
Sbjct: 378 gaagacacattgttagatttttatttatttattttttttataaaatgtgaccatctctac 437

                                                                       
Query: 238 cccaagcaagcatggtaaaataaatttaaactgttttgtttcactttttaaaaaaggaaa 297
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cccaagcaagcatgataaaataaatttaaactgttttgtttcactttttaaaaaaggaaa 497

                                                                       
Query: 298 gtaaacatgtttttattcatcagaaggcactagtagcagacaaaaaataataactgcatt 357
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtaaacatgtatttattcatcagaaggcactagtagcagacaaaaaataataactgcatt 557

                                                                       
Query: 358 caagtcaagcttactgagtttattgacattatttag-gtgaccatgtctgaggaataaac 416
           |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 558 caagtcaagcttactgcgtttattgacattatttagag-gaccatgtctgaggaataaac 616

                                                               
Query: 417 tcgaagccagccatgtcactgaaaac-tttgttcatgaaggcacatttccag 467
           |||||||||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct: 617 tcgaagccagccatgtcactgaaaacctttgttcatgaaggcgcatctccag 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space:   392106
Effective search space used:   392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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