Query= MSMg01no362_k03.b1 MSMg01no362_k03.b1 CHROMAT_FILE:
MSMg01no362_k03.b1 PHD_FILE: MSMg01no362_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:04 2005
(564 letters)
>mm_chr2_33915830_33916793
Length = 964
Score = 1052 bits (544), Expect = 0.0
Identities = 556/560 (99%)
Strand = Plus / Plus
Query: 5 gaattctgaactttggactgcagagggcatggccccaaggaggaatctgggaaaagtggg 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaacgttggactgcagagggcatggccccaaggaggaatctgggaaaagtggg 264
Query: 65 agaagccctggtcacctctgaagtttcttgcacacacagtgcataagttcacagtgacat 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 agaagccctggtcacctctgaagtttcttgcacacacagtgcacaagttcacagtgacat 324
Query: 125 gcagacctaggcacacacagcctcacaggccctatggggatgccaggttgtaggcaggcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagacctaggcacacacagcctcacaggccctatggggatgccaggttgtaggcaggcc 384
Query: 185 tgtggtgcctggattcctcctcaggtagggtgaacacaagttcagaggtccactcaaatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtggtgcctggattcctcctcaggtagggtgaacacaagttcagaggtccactcaaatg 444
Query: 245 tatacgctttacaacaaagatgggaagtggaagacttacttcacaagaataagtatgttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatacgctttacaacaaagatgggaagtggaagacttacttcacaagaataagtatgttc 504
Query: 305 actgtcatgtggagagtcaggcgtggagggctccttacctacatcttgcagctcattttg 364
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 actgtcatgtggagagtcaggcgtggagggttccttacctacatcttgcagctcattttg 564
Query: 365 gtcttgcttggcatgactccctccacttttagcacatggtgcctctataccccatgcaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcttgcttggcatgactccctccacttttagcacatggtgcctctataccccatgcaag 624
Query: 425 tctggagcatggcacagagatggctcagagtatcaggcctgccactccctaagcccacat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctggagcatggcacagagatggctcagagtatcaggcctgccactccctaagcccacat 684
Query: 485 ggttcaacttgagggctccaatagcagaacaggcccatcctgggatctcagcgatatctc 544
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 ggttcaacttgagggctccaatagcagaacaggcccatcctgggatctcagggatatctc 744
Query: 545 tctgccacagcccccctcac 564
||||||||||||||||||||
Sbjct: 745 tctgccacagcccccctcac 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_k03.g1 MSMg01no362_k03.g1 CHROMAT_FILE:
MSMg01no362_k03.g1 PHD_FILE: MSMg01no362_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:05 2005
(487 letters)
>mm_chr2_34074841_34075731
Length = 891
Score = 884 bits (457), Expect = 0.0
Identities = 479/489 (97%), Gaps = 6/489 (1%)
Strand = Plus / Minus
Query: 1 atcctgaatccactaaagcactaga-----acaaaactgaatgcactaaatccaggcact 55
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 688 atcctgaatccactaaagcactagaaccagacaaaactgaatgcactaaatccaggtact 629
Query: 56 gtttacagtagcaaaaggctacgaagaacttgagacgcctgggaaatggagggtggaaga 115
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 628 gtttacagtagcaaaaggctacaaagaacttgagactcctgggaaatggagggtggaaga 569
Query: 116 atttaagccaaagtaaaggctatatttgtggttttggactatccctaagttatatattta 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atttaagccaaagtaaaggctatatttgtggttttggactatccctaagttatatattta 509
Query: 176 aatttgctggcaaaaaaaaaaatcacctttgcttttaaaggaattttatcaggttaaaaa 235
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aatttgctggc-aaaaaaaaaatcacctttgcttttaaaggaattttatcaggttaaaaa 450
Query: 236 tgctgatgtaaccactggaggatgtagctcagtgaagaatcccttcagcgggtatgtagt 295
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgctgatgttaccactggaggatgtagctcagtgaagaatcccttcagcgggtatgtagt 390
Query: 296 tctaggtttaatttgtggtagtggcaaaaaaggtgctgatatattgctgtgttaccacaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tctaggtttaatttgtggtagtggcaaaaaaggtgctgatatattgctgtgttaccacaa 330
Query: 356 atgcctcattccactttgcctttcctaatagctatgtagataaacgaagggcactagctg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atgcctcattccactttgcctttcctaatagctatgtagataaacgaagggcactagctg 270
Query: 416 gtgtaaattttatatttcagtctctctagctaggctcttttcacctcttgcttcagggga 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtgtaaattttatatttcagtctctctagctaggctcttttcacctcttgcttcagggga 210
Query: 476 agtgccttg 484
|||||||||
Sbjct: 209 agtgccttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 891
Length adjustment: 10
Effective length of query: 477
Effective length of database: 881
Effective search space: 420237
Effective search space used: 420237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
