BAC Information

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BAC

Clone NameMSMg01-362L09
Chromosome2 (Build37)
Map Location 120,101,093 - 120,101,576
singlet/doubletsinglet
Overlap genePla2g4d
Upstream geneVps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635
Downstream genePla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362L09.T7 (MSMg01no362_l09.b1)MSMg01-362L09.TJ (MSMg01no362_l09.g1)
ACCAG471331AG471332
length750759
length of high quality
(start - end)		589 (45 - 633)482 (73 - 554)
definitionCHROMAT_FILE: MSMg01no362_l09.b1 PHD_FILE: MSMg01no362_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:11 2005CHROMAT_FILE: MSMg01no362_l09.g1 PHD_FILE: MSMg01no362_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAGAAATTTCTGAAATGGCCCTAAGAACTGCTGCCGATTCGTACT
ACTTATTTATATAAATGGGATTCTCAAGATTGACAATTATGACATCAAAA
TATCCATCAATTCCAAAAAGAAGATGCTCTGTGTCCTACGGTATCTAATA
TTCCACAAGATTTAATTTTTTTGAGCAAAAGCGAACAAGTGCACCTATCT
CATTAACATAAAATAAATGGCAAACTTACATGTGCACCATGAACTGTTTT
AAAATAAAATAAATTTATTTTCTTTTCATTTTTTGTGACAATTCTCCTGA
CTCCTTCGTGCTGGGATTAGAAGCATGTGCCACCATACATGCTTTATTCT
CTGTGTGTATGTGTGTGAGGGTGTGACTTCATGCATGCTAGACAAGCAAA
CTATCAACTGTGTTACACTCCCAGACTCCCAAGTAAATGTCTTAATGATT
TATCAGTAAGTGTCTGATTTGCATACCTATTTTATACACCTATACACGGG
GTTGTGTAAAAATTCCTCATTGAAAAGAAGATATATGTAAAAAAAGTTTA
AGAGGCCTGCTTCCCATTCCGGACAACTGTAAGATGCACAGTTATTTATG
GAAAGCATGATCCAAGCGTTTGTGTAATTATTGGTGAGTGAGACCCCCTA
CCTTATGATGGCTAATTTTATATCAACTTGATACAAGTTATAGTCTTTCG


ATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCAGCAGGGTTTTAGCCACATGCTCC
CTAGCATGACTGATGGGTCCTTCGAGGTCCCTCTGTGACCACTCTGGGTC
CCTGTACAGGTGGGCCATTGTCCTGGGGGAACAAGAGGATGAACGCTGAA
TCCCAATCCTGCCCTGTGTCTAATCCTTAAAGAGGGATTGTTGAGGTCCT
TGATGCCAAGATAGTCCGTCTGGAGACGGATCCTGGGACTTCCTTCTAGT
CCTGGTCTAGGTCTGGTATATATATACACACACACACACATATATATACA
CACACACACATATATACATACATACACATATACATATATACATGTATATA
TACACACATATATGTGTGTATGTATGTATGCATGTATATAGTTATGATTT
AGATTTTATTCACTGGGCTGAGGCTCAACCTACAGTCTCTTACATGCTTG
CAGGTGCTTCAGTGATGAGGTATTTCCGACCCATATATAATTTAGAGTTT
CTCAGCAGCCACATTATGAAATGAGCACGAAAACAGTAAAGAAGCTTTAA
TAACTTATGTTGGTGAATTCAGTAACAGCAGCAGCCAACAGTGGGCCTAT
AAAGGACATTTTCCCATCTTCTCTCCTCCGAGGGAGAACCCACTCTTGCT
CCCAGACCCCTTCTCTTCAAATATGCCCCCTGCTGCTGGCTACATCTTGT
CTCACCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_l09.g1 MSMg01no362_l09.g1 CHROMAT_FILE:
MSMg01no362_l09.g1 PHD_FILE: MSMg01no362_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:11 2005
         (482 letters)



>mm_chr2_120100893_120101776
          Length = 884

 Score =  915 bits (473), Expect = 0.0
 Identities = 481/485 (99%), Gaps = 4/485 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcagcagggttttagccacatgctccctagcatgactgatgggtccttcgaggtccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagcagggttttagccacatgctccctagcatgactgatgggtccttcgaggtccct 260

                                                                       
Query: 61  ctgtgaccactctgggtccctgtacaggtgggccattgtcctgggggaacaagaggatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgaccactctgggtccctgtacaggtgggccattgtcctgggggaacaagaggatga 320

                                                                       
Query: 121 acgctgaatcccaatcctgccctgtgtctaatccttaaagagggattgttgaggtccttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgctgaatcccaatcctgccctgtgtctaatccttaaagagggattgttgaggtccttg 380

                                                                       
Query: 181 atgccaagatagtccgtctggagacggatcctgggacttccttctagtcctggtctaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgccaagatagtccgtctggagacggatcctgggacttccttctagtcctggtctaggt 440

                                                                       
Query: 241 ctggtatatatatacacacacacacacatatatatacacacacacacatatatacataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtatatatatacacacacacacacatatatatacacacacacacatatatacataca 500

                                                                       
Query: 301 tacacatatacatatatacatgtatatatacacacatatatgtgtgtatgtatgtatgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacacatatacatatatacatgtatatatacacacatatatgtgtgtatgtatgtatgca 560

                                                                       
Query: 361 tgtatatagttatgatttagattttattcactgggctgaggctcaacctacagtctctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtatatagttatgatttagattttattcactgggctgaggctcaacctacagtctctta 620

                                                                       
Query: 421 catg---cttgcaggtgcttcagtgatgaggtatttccgacccatatataatttagagtt 477
           || |   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ca-gtctcttgcaggtgcttcagtgatgaggtatttccgacccatatataatttagagtt 679

                
Query: 478 tctca 482
           |||||
Sbjct: 680 tctca 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space:   412528
Effective search space used:   412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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