BAC Information

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BAC

Clone NameMSMg01-363F08
Chromosome2 (Build37)
Map Location 78,269,986 - 78,410,743
singlet/doubletdoublet
Overlap geneLOC383717
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703
Downstream geneLOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363F08.T7 (MSMg01no363_f08.b1)MSMg01-363F08.TJ (MSMg01no363_f08.g1)
ACCAG471798AG471799
length732780
length of high quality
(start - end)
602 (44 - 645)333 (83 - 415)
definitionCHROMAT_FILE: MSMg01no363_f08.b1 PHD_FILE: MSMg01no363_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:00 2005CHROMAT_FILE: MSMg01no363_f08.g1 PHD_FILE: MSMg01no363_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,410,218 - 78,410,743)(78,269,986 - 78,270,317)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGATCTTATGTACCTTGATCTGAGAATTTTGTGCTCTTTTGTGAAG
ACAGTATTTACAGAATAAGGCATAATGGCCACATGAGATCATCAGCTTTC
CATACTTAAAACAGCTGTGAAAAAAATAATGATTTAATAAGAGATATTTT
AATCTTACAATGATGTGTTTCCATATTATTTTCATGGAACATTTCCTGAA
TTTAGAAATATAATTAATGAATTAATCTACTGTGATTTCTGGTATTGTAT
CGAAGGAAGGTTTATATCAGAGATTGAAAATGAAATACCAAACAGTGTAA
CTAACACATGGTTAGCATTTACATGTAGCACAGTGGTTCTCAACTTTCCT
AATGCTAGGAACTTTTAATACAGATTCTTTTGTTGTAGTGACCTAACCAT
AAAATTATTTTGTCATTACTTCATAATTGGAATTTTGCTACTATTATGGA
TCATAATATAAATATCTGATATGCAGGATATCTGGGGTCATGACCCACAG
GTTGAGAGCCACTGATACCATAGTGCTAGGCTCCATCGCCAACCCAAACA
ATGGCTATATAACAGCAAACATGCGTTTGACAATCATAAAGATGGCAGTG
TAATTGATGTGATAGCAGAGNTAGATGGTTTTCAATTTTGTTTCCTTAAA
TAATGTATAACTGAAGTTTAATCTAAAACCAT
NNNCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTTATCTTAGAAGAAA
GCAATAAAACAAATATCACTGAAGATATTGCTTGAGGCTTTCAGAAAACA
CAGAGCAAGGACTGTCTCCTTCAAACTCTCAAAGATGTGAGAATTGACTA
TTTCCATTTGAGGAAGAAGTCACAGTGACCTTGACAAGACATAACATCTC
AGTTTCCCCAGGAGTATTATAAGAAAAGAATACAACTAAAATTACCCAAT
TCATTGTGTGTGTGTGTGTTTTTACTCTATTGAATGTCTTGGGAAATGCT
GTTTCCTCTTCCAGTGTTTATCAATATGCAGAAGCATGGGGTGGAAGGAG
GAGAGAGGGGAAGGNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGNNNNNGNNNNGNNGGNNNGGNTNNG
GGGNNGGGGGGGNGGGGGGGGGGNGGTGGGGGGGGGGGGGGGNGGGGGNG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGTGGGNGTTGGGGTGG
GGTTTTTTTTGTTGTGTTTGTTTTTTTGGGTGTGTTGTTTTGNTGTTGTT
GTGTGGTGTGTGTTTTTTTTATGTTTTGGTGTGGTGNTGTTTGTTGTGGG
GTGTTGTTGTGGGTTTGTTTGTTGTTTGTTTGTGGTGTTTTTTTGTTATT
TTTTTTTTTTTTTGTGTTTTGTTGTGTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_f08.b1 MSMg01no363_f08.b1 CHROMAT_FILE:
MSMg01no363_f08.b1 PHD_FILE: MSMg01no363_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:00 2005
         (602 letters)



>mm_chr2_78410218_78411219
          Length = 1002

 Score =  905 bits (468), Expect = 0.0
 Identities = 508/526 (96%), Gaps = 9/526 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgatcttatgtaccttgatctgagaattttgtgctcttttgtgaagacagtat 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattcttgatctcatgtaccttgatctgagaattttgtgctcttttgtgaagacagtat 467

                                                                       
Query: 65  ttacagaataaggcataatggccacatgagatcatcagctttccatacttaaaacagctg 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 466 ttacagaataaggcataatggccacatgagatcatcagctttctatacttaaaacagctg 407

                                                                       
Query: 125 tgaaaaaaataatgatttaataagagatattttaatcttacaatgatgtgtttccatatt 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agaaaaaaataatgatttaataagagatattttaatcttacaatgatgtgtttccatatt 347

                                                                       
Query: 185 attttcatggaacatttcctgaatttagaaatataattaatgaattaatctactgtgatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 attttcatggaacatttcctgaatttagaaatataattaatgaattaatctactgtgatt 287

                                                                       
Query: 245 tctggtattgtatcgaaggaaggtttatatcagagattgaaaatgaaataccaaacagtg 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 286 tctggtattgtatcgaaggaaggtttatgtcagagattgaaaatgaaataccaaacagtg 227

                                                                       
Query: 305 taactaacacatggttagcatt---tac------atgtagcacagtggttctcaactttc 355
           |||| |||||||||||||||||   |||      ||||||||||||||||| ||||||||
Sbjct: 226 taaccaacacatggttagcattaattacttttagatgtagcacagtggttcccaactttc 167

                                                                       
Query: 356 ctaatgctaggaacttttaatacagattcttttgttgtagtgacctaaccataaaattat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 166 ctaatgctaggaacttttaatacagattcttttgttgtagtgacctaaccataaaattac 107

                                                                       
Query: 416 tttgtcattacttcataattggaattttgctactattatggatcataatataaatatctg 475
           ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 106 tttgtcattacttcataattggaattttgttactattatgaatcataatataaatatctg 47

                                                         
Query: 476 atatgcaggatatctggggtcatgacccacaggttgagagccactg 521
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  atatgcaggatatctggggtcatgacccacaggttgagagccactg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no363_f08.g1 MSMg01no363_f08.g1 CHROMAT_FILE:
MSMg01no363_f08.g1 PHD_FILE: MSMg01no363_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:00 2005
         (333 letters)



>mm_chr2_78269786_78270518
          Length = 733

 Score =  627 bits (324), Expect = 0.0
 Identities = 330/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttatcttagaagaaagcaataaaacaaatatcactgaagatattgcttgaggctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttatcttagaagaaagcaataaaacaaatatcactgaagatattgcttgaggctttc 260

                                                                       
Query: 61  agaaaacacagagcaaggactgtctccttcaaactctcaaagatgtgagaattgactatt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 agaaaacacagagcaaggactgtctccttcaaactctcaaaggtgtgagaattgactatt 320

                                                                       
Query: 121 tccatttgaggaagaagtcacagtgaccttgacaagacataacatctcagtttccccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatttgaggaagaagtcacagtgaccttgacaagacataacatctcagtttccccagg 380

                                                                       
Query: 181 agtattataagaaaagaatacaactaaaattacccaattcattgtgtgtgtgtgtgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtattataagaaaagaatacaactaaaattacccaattcattgtgtgtgtgtgtgtttt 440

                                                                       
Query: 241 tactctattgaatgtcttgggaaatgctgtttcctcttccagtgtttatcaatatgcaga 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tactctattgaatgtcttgggaaatgctgtttcctcttccagagtttatcaatatgcaga 500

                                           
Query: 301 agcatggggtggaaggaggagagaggggaagg 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 agcatggggtggaaggaggagagaggggaagg 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)