BAC Information

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BAC

Clone NameMSMg01-363K08
Chromosome2 (Build37)
Map Location 5,577,810 - 5,578,231
singlet/doubletsinglet
Overlap geneCamk1d
Upstream geneLOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, LOC666599
Downstream geneCdc123, Nudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363K08.T7 (MSMg01no363_k08.b1)MSMg01-363K08.TJ (MSMg01no363_k08.g1)
ACCAG472034AG472035
length782758
length of high quality
(start - end)
179 (70 - 248)471 (83 - 553)
definitionCHROMAT_FILE: MSMg01no363_k08.b1 PHD_FILE: MSMg01no363_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:25 2005CHROMAT_FILE: MSMg01no363_k08.g1 PHD_FILE: MSMg01no363_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCCCCAAATCCCAAACACTCTACCCTCTCTACACATAGAATTCTATGTA
AAGATGTATATATAGATCTATTTATTTGCTTGTGTGTGCATTTATTTGTA
TGTATGTATTATGTATGTTTGTATGTATGTACATATGTATGTATGTATGT
ACGTATTTAGAAATGGGTCTCACTATGTAGTCCTGGCTGGCCTAGAACTC
ACTATGTAGACTACACTGGCCTCAAACTCACAGAGATCAGCCTGCCTCTG
CCTCTCAAGCGTTGACTTTTTTTTTTTTGTACCATCACACCCAGCTGACT
TTTTACCTACTCACCCTTCCTAAGAAACTGGTACTTGGAACTGCATGTTT
CTAAAAGCACACACCCCAATATGGCTGCTAAACGCACCTTTGATGATTCA
CTCCAGCTTCCTTCTATGCCTCTGTGTGCTCGCTCTTTTCTTGTTCCATA
CTGTTCTTTATTGTTTCCTCGCCTCCTACCATCTACTTTTGCCCCACACA
CTCTATATCATTCCCTCCCCTTGTTTTATCTCTCTCTACCCTCTAATTTT
TGCTCTTCACTCACCCGTTCACTCCTTTTTTTTTCCCTAACCTCTCTCCT
CTCTCTCCTCCCATTCCCCCACTCTTCCTTTTTTTTCTAATAACAACCCC
TTCCTCTCTTTCTCTCCTTCCCCTCTTCCTCTTATTCTCTCTCTCTTCCC
CATATCTTACTTACTATCTTTTTCCTCTATTT
AAACCACAATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTGGGATGAAGTGCA
GAGCTAATGTGCACACAGATGCTTGGCTAGGGTGTCTAAAACCTTGTCGC
AGTCTTCAGCATGACATTAAGAACAAGAAGAGCTAGGCATGGTGGTTCAT
GGCAGAAACCTCAGCATTTGGGAGATGGACACAGAAGGACCAGGGCTTCA
GGGTCATTCTTGATCTTCGACTACATAGCCGTTCCGAAGCCACTGTCTAA
AAACAGAATAAGACATAAGATTTTATTTTGTCCTCGCTTAAAATCTGCTG
GAAACTCACTGATTCCGAGCCAGGGGAGGGGTGTCAGCAGAGCACCCTGG
TCCTGTTTTCCCACATTTTCTGTCCTCATTACCCGTCACTCAGACTTTGG
AGTTCAGTCCCCTGAACCATTTGTGGTGACCCTCAGTATCCCTCCCTCCT
TCCTTCCCCCGTTCTGCTCTGCTGTTTCCCTAGTTATTTCCCCTCCCCTT
CTCCATCTTTGAATGCCCTCCTGGGGATTTCGCCACCATTTCTCCCATCT
CTTCTGTGTAGGCCTGAGGTCACCCTCGGCTGGTGTTCCCCCAAGAACTG
TTTGATCTTGACCTTTCGAAAACGTGCCCCCCCTCTCGATTTTTCAGTTA
TTCCCACTGGCCTTAACGTCGTTTTGTCCGTCTCCTCTCCCCCAGTCTTT
CCTGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_k08.g1 MSMg01no363_k08.g1 CHROMAT_FILE:
MSMg01no363_k08.g1 PHD_FILE: MSMg01no363_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:25 2005
         (471 letters)



>mm_chr2_5577362_5578231
          Length = 870

 Score =  710 bits (367), Expect = 0.0
 Identities = 411/427 (96%), Gaps = 7/427 (1%)
 Strand = Plus / Minus

                                                                       
Query: 42  tggctagggtgtctaaaaccttgtcgcagtcttcagcatgacattaagaacaagaagagc 101
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tggctagggtgcctaaagccttgtcgcagtcttcagcatgacattaagaacaagaagagc 811

                                                                       
Query: 102 taggcatggtggttcatggcagaaacctcagcatttgggagatggacacagaaggaccag 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 taggcatggtggttcatggcagaaacctcagcatttgggagatggacacagaaggaccag 751

                                                                       
Query: 162 ggcttcagggtcattcttgatcttcgactacatagccgttccgaagccactgtctaaaaa 221
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggcttcaaggtcattcttgatcttcgactacatagccgttccgaagccactgtctaaaaa 691

                                                                       
Query: 222 cagaataagacataagattttattttgtcctcgcttaaaatctgctggaaactcactgat 281
           ||||||||||||||||||   ||  |||||||||||||||||||| ||||||||||||||
Sbjct: 690 cagaataagacataagatcacatcatgtcctcgcttaaaatctgccggaaactcactgat 631

                                                                       
Query: 282 tccgagccaggggaggggtgtcagcagagcaccctggtcctgttttcccacattttctgt 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tccgagccaggggaggggtgtcagcagagcaccctggtcctgttttcccacattttctgt 571

                                                                       
Query: 342 cctcattacccgtcactcagactttggagttcagtcccctgaaccatttgtggtgaccct 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cctcattacccgtcactcagactttggagttcagtcccctgaaccatttgtggtgaccct 511

                                                                       
Query: 402 cagtatccctccctccttccttcccccgttctgctctgctgtttccctag--ttatttcc 459
           |||||| ||||||||||||||||||||||||||||||||||||||||  |  |||||| |
Sbjct: 510 cagtat-cctccctccttccttcccccgttctgctctgctgtttccc--gtcttattt-c 455

                  
Query: 460 cctcccc 466
           || ||||
Sbjct: 454 cc-cccc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space:   396460
Effective search space used:   396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)