BAC Information

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BAC

Clone NameMSMg01-363P21
Chromosome2 (Build37)
Map Location 143,062,891 - 143,063,318
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363P21.T7 (MSMg01no363_p21.b1)MSMg01-363P21.TJ (MSMg01no363_p21.g1)
ACCAG472296AG472297
length1,382767
length of high quality
(start - end)		---481 (76 - 556)
definitionCHROMAT_FILE: MSMg01no363_p21.b1 PHD_FILE: MSMg01no363_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:54 2005CHROMAT_FILE: MSMg01no363_p21.g1 PHD_FILE: MSMg01no363_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CACCTTCTGTCCCAGCTGTGCCCGCACTATATGACGATGTTAGAGCCGCG
CTGTGGCCGCGAATATTATACTTGAGCGTCTGCCGTTACCCCTAACACTG
CCGCCGTATTACACAGATGAGATGAGAAAATCTGCCTGCTGTATGNTCTG
ACATAATCACTCCCAGATTCTGTCGCTCTGTCTACGCATGGGGTGCACGA
TATCTCCTACGTGTCTTGCTGCCTATTATCGCAGCCCAGGCTCCGGCGCA
CTGATCGCGGACCGAGCGGCTGATCTGCTGGCCTGATATTATATAAGTGT
ACCGTCATGATAGCGGCGCGGAAGCGCGGCGGGGACTCCTGGTCCGGTCA
TGGGTATTGCTGATGCTGAATCTATCCGATTACTGAGCACTGACATGTCG
ACAACATCTCGTAACCAGCTATATACGGCCCACGACAAGNATATCGTCGC
CGCGTGTCCAGTTCTAGCCGCCGATGACGCAGTCTTAGCATCATATACAC
TCATTCACAGAACATAGTGTGCCACACGTTTAGCTCATTGTAGTACCCTC
TATATCCCATCATCATAATATAATTCTACACGTTCTCGATTACGGCGCAT
TGTTAGAGGACGGGCGCCGGCTACATAGTGATCANTGGACCGAGAATCAT
TTTCCACGCCTGTGTAGTGTCACTCCCACTTCATTGCCATTGTACCCCCT
TACGTTCGCCGATGTGTATCGCGTCACTCTACACATCCCGTTGCACTTGT
ATACGCCTCATTAACTCTCGTCTACGCGATGACGTCTTGTCATGCCCGCT
ATATCACATGTAGTGCGCCNCAATACCAGCGACCACTACATCTACACACA
AGCACATCTTACTCGCACATCATCGACTCACTCTTAGCTACACACCGCCT
GTTATCCGCACATATCCCTGTACCGCTACAGGACAGATCCTTGACCATAA
GCCGCCCATATTCCCGCACTTCGTGCGTGTGCTTCTTAGTCACTACGCCG
CCCACGCGCGACTGAGGATACCTACTGCCACTACACATGCCGAAGCGAAA
AGAGTGCTACGAGAGGACGTCATGGCCGCATGAGATGGATATTAGCCACC
CTAATACCACTGCGCCACCTTCCACGAGTGTGATATTTCTGTAGTTCGCC
ACAAATGCGCGCTGCACTGACTCCGCTATCTCTTGATTCTATCTTATTTC
GGATGACGCGGCATAGAATTACTTGCTCGNCANCAGAACACTGCAACCTG
ATTGCTAATTTCTGAGTCGCGCTGACCACGCACATCACTACGTACTATAA
TATCTGGTTATCGATCTACACGTGGCTGATCCTACCAACTACATGCACGC
TGGACGCCGCCTCTATGTAGAAACGTCTCGCC

ACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGGGTCAGTCTTAAAGCCAAAAA
GAGGAACTTTAGGAAGGGGTAGGTGATCTATATCTTGATTGGTGGGTTCT
ATCTCTGAGGGTCTGGGTATTGCTCTATTCAAACTAGCTATTCTTACTTC
ATGCCAGGGAGGGGTAGCTCTTGACCTCTTGGCCACACACTTGGCTAACT
GTCCTTTTAAAAGCTGGGGAGTCCCTTTTACATAAACCTGTGGTTGTTCC
AGTAACTGACTTCCCCAGTTCTGATAAGTAGAAAGTCAGGCTTGGTCTCC
TGAACTGCTAGTTTGCAGTTCACCATGGAGTCAGTCTGGCTCAGGCCAAT
TTGCTCCTTTCAGATGTGACATGGGGCCAGATTACAATGTCCAAAGAATT
GTGCCCAGTGGCCCCATCTTTTAGAGGCTTCACAATATCCTCATCAGAAC
CATTCATTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCAGCA
TCATCAGCTGTAGTGGATATCCTCAAACATGAGCTTTGGAAAGACTTTTC
TGACTCACAGTTTATTCTAACTAGTCTTCCTGACCAGATCACCCTTTTAT
GCCTCTTCTATAAATTCACTTTCAAGTCCCCTCCCCATGTTTCCTCCCCA
TTAAAAACTTCCTATATTTCCTTACGAAATCCCTTCCGATGAGTGAGAAT
ACTTTCTATTTTTCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_p21.g1 MSMg01no363_p21.g1 CHROMAT_FILE:
MSMg01no363_p21.g1 PHD_FILE: MSMg01no363_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:55 2005
         (481 letters)



>mm_chr2_143062887_143063767
          Length = 881

 Score =  766 bits (396), Expect = 0.0
 Identities = 420/428 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagggtcagtcttaaagccaaaaagaggaactttaggaaggggtaggtgatctatatct 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 acagggtcattcttaaagccaaaaagaggaactttaggaaggggtaggtgatctatatct 373

                                                                       
Query: 61  tgattggtgggttctatctctgagggtctgggtattgctctattcaaactagctattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 372 tgattggtgggttctatctctgagggtctgggtattgctctattcaaactagctagtctt 313

                                                                       
Query: 121 acttcatgccagggaggggtagctcttgacctcttggccacacacttggctaactgtcct 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 312 acttcatgccagggaggggtagctcttgacctcttggccacacgcttggctaactgtcct 253

                                                                       
Query: 181 tttaaaagctggggagtcccttttacataaacctgtggttgttccagtaactgacttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttaaaagctggggagtcccttttacataaacctgtggttgttccagtaactgacttccc 193

                                                                       
Query: 241 cagttctgataagtagaaagtcaggcttggtctcctgaactgctagtttgcagttcacca 300
           ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 192 cagttctgagaagtagaaactcaggcttggtctcctgaactgctagtttgcagtccacca 133

                                                                       
Query: 301 tggagtcagtctggctcaggccaatttgctcctttcagatgtgacatggggccagattac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tggagtcagtctggctcaggccaatttgctcctttcagatgtgacatggggccagattac 73

                                                                       
Query: 361 aatgtccaaagaattgtgcccagtggccccatcttttagaggcttcacaatatcctcatc 420
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 72  agtgtccaaagaattgtgcccagtggccccatcttttagaggcttcataatatcctcatc 13

                   
Query: 421 agaaccat 428
           ||||||||
Sbjct: 12  agaaccat 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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