BAC Information

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BAC

Clone NameMSMg01-364C20
Chromosome2 (Build37)
Map Location 45,568,903 - 45,692,420
singlet/doubletdoublet
Overlap geneLOC100041337, LOC666604
Upstream geneGtdc1, Zeb2, LOC100042661
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364C20.T7 (MSMg01no364_c20.b1)MSMg01-364C20.TJ (MSMg01no364_c20.g1)
ACCAG472437AG472438
length783795
length of high quality
(start - end)		441 (51 - 491)348 (80 - 427)
definitionCHROMAT_FILE: MSMg01no364_c20.b1 PHD_FILE: MSMg01no364_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:11 2005CHROMAT_FILE: MSMg01no364_c20.g1 PHD_FILE: MSMg01no364_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,691,984 - 45,692,420)(45,568,903 - 45,569,250)
sequence
NNNTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATATCTGATTCAGGTTAACGAAAACACAGATGGTGATTCG
GTAACTGTTGAGTTGCTGTAACAGAATGAAAATGATCCCATTAGTTCTCT
GGAAATGTGAGGGAATTTGGAAATTAGTATGCAGATACATTGTATGGTGC
TAGACAGCTTGGTCTGCTCGGATCATCGCTGATTATACTTTGTTTGGGTT
GGCAACACTGAACTTAATAAATGAAAAAATGTTCCAGTATACCACAGTTG
GAAACTGTTCAAGGTTGAAATAGGTGTGCAGGCTTTCAAAAGAAGAGAGT
TAAGTAAACAAATGTCAATCAATGCAAAGCTAGCTACTTTTTTTCCTTTA
AAGAATACGTCTGCTCTTGAGAACCAAGTGTCATAAAAATGGAAGGCCTT
TACCGGATACATATGTCTGTGTGGNATGTATTATCACAAAGGCATTTTAT
ATGCATAGTATCAGTTGGAGGGAGACGCCTGAGCATTTTATAAGTTTTCT
TTCTGGGCGAAATAAAAAAAATCCGCGCTATGGAGGATTACAAATTTTTT
CCCAAAGAAACCAAATAATTTCTGATGAAAATGTGTTACCGGAATAAAAA
AGGTGTTTTTAATGGCCACTGATAAGTTAATAGTCGGCTAGAAAAACCCC
ATTTATTCTCTTCTTGCCTTCTTTGCGTGAATAATCTCTTTAAAACTTCC
TTTTTCTTCTCTGCCTGTTATCAATACATATTT

NTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTGATAAAGAAAGCTACC
AGCTAAATACCACAATGAAGTAGGGTTGTTTTTCTTTTTTCTTTTTCTTC
TTTGGTGTCATAAGTTTTTAAAGGTTTCTTTATTAAAGTATTTTTATTAA
ATTTTTATTTTTATTATAATATCCTTTATTTTAAGAGTTTAATATATGTA
CATAATAAAATATGATAAATCTATTTCCCCATGTTTCCCTCCAGATCCTC
TTATTCCTTCAAAATTTTCCACTCCTAATTTTATGGATTTTTTTGATAAC
CAAGTAAGTCCAAATGTAATGGCAGGTTTTAAAGCATTTACAAAATGAAT
CTATTGTTAGTAATTACATACATGTATAGATCCCATTTAACACCCATTAC
CCATCCTTCCCTCTGTACTCTTGATGATGTCCTCTTATAGGTATGCCTTT
TTTTCTGGTTAGTTCAGCTAAACTAAACTTTTGGTGAGAAAATTTTTTTA
AATCCATGTATAAGTGGAATTCTATCTCCCTTCCAGCTGACTTAAAATTA
TTATGGGCTTCACAAGAGGAGAAGTCTAATTTACCAGACATTTGCCTATT
AAACATCCGGTTTTTTTTTCTAATTCTTATTTTTGTTGTGATAAATTACA
TTCTTCTGATTTATACCCTAAATATCAGATACCATAAGTTGTATATACAT
ACATACGTTGGAACTTATGTCTGTATTCTGACGTCTAAGATTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_c20.b1 MSMg01no364_c20.b1 CHROMAT_FILE:
MSMg01no364_c20.b1 PHD_FILE: MSMg01no364_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:11 2005
         (441 letters)



>mm_chr2_45691780_45692620
          Length = 841

 Score =  839 bits (434), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatctgattcaggttaacgaaaacacagatggtgattcggtaactgttgagtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gaattcatatctgattcaggttaacgaaaacacagatggtgattcggtaactgttgagtt 582

                                                                       
Query: 65  gctgtaacagaatgaaaatgatcccattagttctctggaaatgtgagggaatttggaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gctgtaacagaatgaaaatgatcccattagttctctggaaatgtgagggaatttggaaat 522

                                                                       
Query: 125 tagtatgcagatacattgtatggtgctagacagcttggtctgctcggatcatcgctgatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tagtatgcagatacattgtatggtgctagacagcttggtctgctcggatcatcgctgatt 462

                                                                       
Query: 185 atactttgtttgggttggcaacactgaacttaataaatgaaaaaatgttccagtatacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atactttgtttgggttggcaacactgaacttaataaatgaaaaaatgttccagtatacca 402

                                                                       
Query: 245 cagttggaaactgttcaaggttgaaataggtgtgcaggctttcaaaagaagagagttaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cagttggaaactgttcaaggttgaaataggtgtgcaggctttcaaaagaagagagttaag 342

                                                                       
Query: 305 taaacaaatgtcaatcaatgcaaagctagctactttttttcctttaaagaatacgtctgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 taaacaaatgtcaatcaatgcaaagctagctactttttttcctttaaagaatacgtctgc 282

                                                                       
Query: 365 tcttgagaaccaagtgtcataaaaatggaaggcctttaccggatacatatgtctgtgtgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcttgagaaccaagtgtcataaaaatggaaggcctttaccggatacatatgtctgtgtgg 222

                            
Query: 425 natgtattatcacaaag 441
            ||||||||||||||||
Sbjct: 221 tatgtattatcacaaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_c20.g1 MSMg01no364_c20.g1 CHROMAT_FILE:
MSMg01no364_c20.g1 PHD_FILE: MSMg01no364_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:11 2005
         (348 letters)



>mm_chr2_45568703_45569450
          Length = 748

 Score =  650 bits (336), Expect = 0.0
 Identities = 345/348 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattgataaagaaagctaccagctaaataccacaatgaagtagggttgtttttcttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattgataaagaaagctaccagctaaataccacaatgaagtagggttgtttttcttttt 260

                                                                       
Query: 61  tctttttcttctttggtgtcataagtttttaaaggtttctttattaaagtatttttatta 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttttcttctttggtgtcataggtttttaaaggtttctttattaaagtatttttatta 320

                                                                       
Query: 121 aatttttatttttattataatatcctttattttaagagtttaatatatgtacataataaa 180
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aattttaatttttattataatatcctttattttaagagtttaatatatgcacataataaa 380

                                                                       
Query: 181 atatgataaatctatttccccatgtttccctccagatcctcttattccttcaaaattttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgataaatctatttccccatgtttccctccagatcctcttattccttcaaaattttc 440

                                                                       
Query: 241 cactcctaattttatggatttttttgataaccaagtaagtccaaatgtaatggcaggttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactcctaattttatggatttttttgataaccaagtaagtccaaatgtaatggcaggttt 500

                                                           
Query: 301 taaagcatttacaaaatgaatctattgttagtaattacatacatgtat 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagcatttacaaaatgaatctattgttagtaattacatacatgtat 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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