BAC Information

Click to search

BAC

Clone NameMSMg01-364D21
Chromosome2 (Build37)
Map Location 126,245,888 - 126,246,226
singlet/doubletsinglet
Overlap genenone
Upstream geneFbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
Downstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364D21.T7 (MSMg01no364_d21.b1)MSMg01-364D21.TJ (MSMg01no364_d21.g1)
ACCAG472487AG472488
length762765
length of high quality
(start - end)		442 (51 - 492)339 (158 - 496)
definitionCHROMAT_FILE: MSMg01no364_d21.b1 PHD_FILE: MSMg01no364_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:17 2005CHROMAT_FILE: MSMg01no364_d21.g1 PHD_FILE: MSMg01no364_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGACTTAGAATTATGGTAGAACTTCTAGCAATCTCTGAAA
CAGGTCTAACCATCCTTCTCTGTCCTTTCTTATTATGTATTTATGTGATA
CAACATTCACAACAGGTTGCAAGGCAGAGAGTCATCTGAGATGCTCTGCG
TGCAGTAAATACCACACTTTCGGCCAAAATTTGATTATTTATGTAAAAAT
AAACAAGCACACCCATCTTATTAGTATGTAAATTTTATTTAATCTTTAGT
AAATGGTAAAATATGTATGTAGATGGATGAATTGTTGCAAGTGACTTTAT
TATCTACTAACAGTAAGTATACACCCATTTTTAAATATTTATACAGGCAA
GGTCACCTGAAAGATGACGCACAAGTGAAAAGGGTTTAAGAGGCCCGTCT
GTAGGGCACTTCGGTTCTCAAGCAGATGTAAAAGCTGAAGCAAAACACGC
CTGGTGCTGGGGAACTAGAAGATTCCAACAGGAAACAGGTAAGGACCGGG
TGGGAGACTCCCTGTGTGTGCGAAGGGAGCGAAACCCGTTTTTTTAAAGA
AGAAGGGAAAAAATTTCCCACGCCCCTAAAAAGTTGGTCTTGTTTATCCT
CAACCCCCCCCTGGGATTTTTCCCCAAAATAATATCAAGCCTTATAAAAC
CCCCTTGTTTGAAAACATTCCTCCTCTTATTTTTACGCCAAATTCTCTTC
TTTTGGTTTCCT

TTTTTTTTCCAATATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCTTGGTGGTATAATC
TTGGCTAATAGCTAGGTAGGTCTTTGTCTGTAGAGTGACTCAGCCACTGA
AGCTTTGGTAAATTGGACATGTAGTTAAACCACCTTCTGCAGTGGGCGAC
TGTCAAAATTGAGATTTGGAACAGATATTTACCAGTTTATGTCCATTCAT
TCTTTTGTTCATTTATTTGCTTGGCAAATGTATATTTCATACAATGCTAA
AGAGTCTGTGGGCTCGTCCCAAAGAGGCCTTTAATTAGGTGATTGCTAAT
GTACTCAGGCCCGGAACATGATGTTGATATAGGAACAAGCACTCACTGTA
TATTATAAGTTATCTTTTCAAATACATGCAGCCTTTGATGCATTTGTGAG
ACTGGCATATGTGTATGTAGGCAAATATGTGTGTGTGTGTGTGTGTGTGT
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTNNNTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNNTTTTNTTTTTN
TTTTNTTTTTTTNTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTATA
TCCTAAGCCAGGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_d21.g1 MSMg01no364_d21.g1 CHROMAT_FILE:
MSMg01no364_d21.g1 PHD_FILE: MSMg01no364_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:17 2005
         (339 letters)



>mm_chr2_126245727_126246465
          Length = 739

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaaattggacatgtagttaaaccaccttctgcagtgggcgactgtcaaaattgagattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtaaattggacatgtagttaaaccaccttctgcagtgggcgactgtcaaaattgagattt 441

                                                                       
Query: 61  ggaacagatatttaccagtttatgtccattcattcttttgttcatttatttgcttggcaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 ggaacagatatttaccagtttatgtccattcattcttttgttcatttatttgtttggcaa 381

                                                                       
Query: 121 atgtatatttcatacaatgctaaagagtctgtgggctcgtcccaaagaggcctttaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgtatatttcatacaatgctaaagagtctgtgggctcgtcccaaagaggcctttaatta 321

                                                                       
Query: 181 ggtgattgctaatgtactcaggcccggaacatgatgttgatataggaacaagcactcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtgattgctaatgtactcaggcccggaacatgatgttgatataggaacaagcactcact 261

                                                                       
Query: 241 gtatattataagttatcttttcaaatacatgcagcctttgatgcatttgtgagactggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtatattataagttatcttttcaaatacatgcagcctttgatgcatttgtgagactggca 201

                                                  
Query: 301 tatgtgtatgtaggcaaatatgtgtgtgtgtgtgtgtgt 339
           |||||||||||||||| ||||||||||||||||||||||
Sbjct: 200 tatgtgtatgtaggcagatatgtgtgtgtgtgtgtgtgt 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |