BAC Information

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BAC

Clone NameMSMg01-364I01
Chromosome2 (Build37)
Map Location 86,054,596 - 86,116,200
singlet/doubletdoublet
Overlap geneOlfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051
Upstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045
Downstream geneGA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364I01.T7 (MSMg01no364_i01.b1)MSMg01-364I01.TJ (MSMg01no364_i01.g1)
ACCAG472685AG472686
length763764
length of high quality
(start - end)		597 (49 - 645)518 (79 - 596)
definitionCHROMAT_FILE: MSMg01no364_i01.b1 PHD_FILE: MSMg01no364_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:38 2005CHROMAT_FILE: MSMg01no364_i01.g1 PHD_FILE: MSMg01no364_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:38 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(86,054,596 - 86,055,188)(86,115,683 - 86,116,200)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAACTGAACTCCATTGCATTGCCTGAACTCAGCTGTACTGCCC
TCACAGAGCTCTCCTCCTCCAATTAGATATCACTTCCAAACATCCCTGCT
TCCTTCTAAAAGTAACCTTTAACTGTTTAAGATTAAAGTTGTATACCAAG
TTTGTGTCTGTATTCCAGGCAGATCATACTGTAATCTTGTGCATGTTTAA
ATTCCAGCTGGATCACATAGACCTAAAAGCTATTATGGATGTGATCTCTT
GCCAGAGCAGCCGTTTTGCTGAATTAAAATTCCTCTACATTAGCTTCTAG
GAGAGGAAGGGTCAAGTTTCTATAAAAATGGATCCCCTGATAAATCAACC
ATGACCCATTAGAAGGTCACATATGTAAGATTATCCTTGAAGTAAGAATT
AAAAAGACACGAAGTGGGTAGTAAAGGGAAGGTAGATAGAAATGAAAAGA
GTTAAGGGGAGAGAGCAAATATGATAAAAGTAGGTACCAAATTATCAAAG
AACTAATGTAAATATTTTAAAAAATTAAAAAGTTTATACAAAAATGCCTA
TGACATTTGAAAAACGTTTTACAGGAAAGATAATATTATATCACCCTAAA
ATGACACCTGGTGTTGCATCATGATTAATTATTTCATACCATAATCCANG
AGTAATACATTTAATTAATTGTTTTACAAATTAATTTAAATATACCATAA
GGATTAGTTAGTG

CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATCTCTACAGTATCTTCCA
GGCTCTGCTGTTCCCTATTAGGTATTTCACATTAAACTTCTGTGGTGCTA
ATGTTATAAGCCATTTCTATTGTGATGTTGTCCCCTTACTACCTTTGATC
TGTTCACATGTAGAAGAGACAGAATTATTGACTATATTGTTTTCAGCCTT
CAATTTAATCTCTTCTCTTCTTGTTGTTCTTTTGTCTTACATGCTAATTT
TGTTAACCATATTTCGAATGCGTTCTGCAGAAGGTAGGAAAAAAGCTTTC
TCCACTTGTGGTTCCCATCTGACAGTGGTGGTTGTGTTCTACGGTTCTCT
ACTCTTCATGTATGTTCAGCCTAAATCTGCTCACTCATTTGAATATGACA
AAGCAGCATCTGTGTTTTATACTTTAGTGATCCCCATGCTTAACCCCTTG
ATTTATAGTTTAAGGAACAAAGAGGTAAAAAATGCCTTTCATAGAGTATT
TAAGAATCTATGAAGACTGCATTATTCAGTATTAAGTAATAATATGTGAC
AATTGGAACTGCCATATGATATTTCCAAAATTGTTTGCATTTACCTCCAC
AAAATTCTATTATAGTTTAAATGGAAATATTGCTTCCCAATTTTTACTCC
AATCCTCCTTATTATAAAAATATTAATTTAACCTTAAATGGTTACTCTTA
AAATCTCGCTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_i01.b1 MSMg01no364_i01.b1 CHROMAT_FILE:
MSMg01no364_i01.b1 PHD_FILE: MSMg01no364_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:38 2005
         (597 letters)



>mm_chr2_86054392_86055388
          Length = 997

 Score = 1085 bits (561), Expect = 0.0
 Identities = 585/593 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaactgaactccattgcattgcctgaactcagctgtactgccctcacagagctct 64
           |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct: 205 gaattcaactgaactccattgcattgcctgaattcagctgtactgcacttacagagctct 264

                                                                       
Query: 65  cctcctccaattagatatcacttccaaacatccctgcttccttctaaaagtaacctttaa 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctccaccaattagatatcacttccaaacatccctgcttccttctaaaagtaacctttaa 324

                                                                       
Query: 125 ctgtttaagattaaagttgtataccaagtttgtgtctgtattccaggcagatcatactgt 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ctgtttaagattaaagttgtataccaagtttgtgtctgtattccagacagatcatactgt 384

                                                                       
Query: 185 aatcttgtgcatgtttaaattccagctggatcacatagacctaaaagctattatggatgt 244
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actcttgtgcatgtttaaattccagctggatcacatagacctaaaagctattatggatgt 444

                                                                       
Query: 245 gatctcttgccagagcagccgttttgctgaattaaaattcctctacattagcttctagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatctcttgccagagcagccgttttgctgaattaaaattcctctacattagcttctagga 504

                                                                       
Query: 305 gaggaagggtcaagtttctataaaaatggatcccctgataaatcaaccatgacccattag 364
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggaagggtcaagttcctataaaaatggatcccctgataaatcaaccatgacccattag 564

                                                                       
Query: 365 aaggtcacatatgtaagattatccttgaagtaagaattaaaaagacacgaagtgggtagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggtcacatatgtaagattatccttgaagtaagaattaaaaagacacgaagtgggtagt 624

                                                                       
Query: 425 aaagggaaggtagatagaaatgaaaagagttaaggggagagagcaaatatgataaaagta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaagggaaggtagatagaaatgaaaagagttaaggggagagagcaaatatgataaaagta 684

                                                                       
Query: 485 ggtaccaaattatcaaagaactaatgtaaatattttaaaaaattaaaaagtttatacaaa 544
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 685 ggtaccaaattatcaaagaactaatgtaaatatttttaaaaattaaaaagtttatacaaa 744

                                                                
Query: 545 aatgcctatgacatttgaaaaacgttttacaggaaagataatattatatcacc 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatgcctatgacatttgaaaaacgttttacaggaaagataatattatatcacc 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_i01.g1 MSMg01no364_i01.g1 CHROMAT_FILE:
MSMg01no364_i01.g1 PHD_FILE: MSMg01no364_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:38 2005
         (518 letters)



>mm_chr2_86115483_86116400
          Length = 918

 Score =  963 bits (498), Expect = 0.0
 Identities = 513/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatctctacagtatcttccaggctctgctgttccctattaggtatttcacattaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 718 catatctctacagtatcttccaggctctgctgttccctattaggtatttcacattaagct 659

                                                                       
Query: 61  tctgtggtgctaatgttataagccatttctattgtgatgttgtccccttactacctttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tctgtggtgctaatgttataagccatttctattgtgatgttgtccccttactacctttga 599

                                                                       
Query: 121 tctgttcacatgtagaagagacagaattattgactatattgttttcagccttcaatttaa 180
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 598 tctgttcacatgtagaggagacagaattattgactatactgttttcagccttcaatttaa 539

                                                                       
Query: 181 tctcttctcttcttgttgttcttttgtcttacatgctaattttgttaaccatatttcgaa 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tctcttctcttgttgttgttcttttgtcttacatgctaattttgttaaccatatttcgaa 479

                                                                       
Query: 241 tgcgttctgcagaaggtaggaaaaaagctttctccacttgtggttcccatctgacagtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgcgttctgcagaaggtaggaaaaaagctttctccacttgtggttcccatctgacagtgg 419

                                                                       
Query: 301 tggttgtgttctacggttctctactcttcatgtatgttcagcctaaatctgctcactcat 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tggttgtgttctatggttctctactcttcatgtatgttcagcctaaatctgctcactcat 359

                                                                       
Query: 361 ttgaatatgacaaagcagcatctgtgttttatactttagtgatccccatgcttaacccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttgaatatgacaaagcagcatctgtgttttatactttagtgatccccatgcttaacccct 299

                                                                       
Query: 421 tgatttatagtttaaggaacaaagaggtaaaaaatgcctttcatagagtatttaagaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgatttatagtttaaggaacaaagaggtaaaaaatgcctttcatagagtatttaagaatc 239

                                                 
Query: 481 tatgaagactgcattattcagtattaagtaataatatg 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tatgaagactgcattattcagtattaagtaataatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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