BAC Information

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BAC

Clone NameMSMg01-365C01
Chromosome2 (Build37)
Map Location 85,576,183 - 85,752,895
singlet/doubletdoublet
Overlap geneOlfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024
Upstream geneYpel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009
Downstream geneOlfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365C01.T7 (MSMg01no365_c01.b1)MSMg01-365C01.TJ (MSMg01no365_c01.g1)
ACCAG473159AG473160
length723734
length of high quality
(start - end)		535 (47 - 581)596 (57 - 652)
definitionCHROMAT_FILE: MSMg01no365_c01.b1 PHD_FILE: MSMg01no365_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:33 2005CHROMAT_FILE: MSMg01no365_c01.g1 PHD_FILE: MSMg01no365_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,752,365 - 85,752,895)(85,576,183 - 85,576,778)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTTGACAAATGAAGATTATAGTTGTCAAAATCCCATAAAACCC
AAAACATATATCAATGATGCTTTTGAATATAGGAGGAGAGATATTTTATT
AAAATTGTGAAAATTTTATTAATTATTTCCCTAAAATATAAGATTTTGAG
AGAGATATGAATGAAAGTCTATGAATCAAATAAAATCAAGTGGATTTCCT
GGCCCCATTTTTTTCTTGTGGACAATTCTCAATCTGATATTAGATCCCAT
ACTTATTGCTTGATATCTTTACCAAGATGTTTTGAATGGTATTTCCTCAT
AAGTGATTTCCATATAAATATAATGCATTCTTCTGTCAGGGTATTTTCAG
ATTTATCCAAGTAATATCTAAGAGGATAGTATTTTAATTTGAAACCTAAC
TCTTGCTGTCTTTTACAAAAGCACTTAATTACCCTAAATTCTTTTTTATC
TGTAAGAAACAAATTTTACTTTCTATCTTCTAGCAGTGCTAATGCTATAC
TTTTGACTCCAATACACACACACACACACACACACACACACACACACACG
ACAATAGCTATTCCATGTTAAGTGCCTAATGTCTTACTCCCTGGGACATA
TAAATACCGCCGAGATAATGGTACCTGGCACACTAATTTCAAAAATTCTC
CTAATTAACTATATATAAAGGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCAGGAAAGTAACTATCTACTCAAGGAAGATGCAATATGTTCA
GAGGTTTATAATAAAACAATGTCATATAAGATAGTAAAAATAATATTACT
AAGGTCATATTTTAAAATCAGCTACAATTCTGTGCCTCTTACTAAGAGTC
TCAAATTTCATTGAAAGACATAGGTAAAACATGAATATCCTCTTCAAACT
TCTACTTCATATCAACCCTTTCTCAAATTCAACTTGTATGTCCCTTATTT
TTCTAGGGCATCTAATTTTTTAGATTATAATACAAAAATTCTCCTTTCCC
GTTCCTCTATCTAAACCATCCCATTTATCCCTCGCTCTCTCCTTTAAGTT
CATTGCCCAATTAAACATAATTGTTATTGCACACATGTATGCATATGTAT
TATGCATGTGCATATGATATATATAAAATCTATAATCTATATCTATATTT
ATATATCCATATCTATTGCTCTTTGATTTGCTGAATGTTAGATAATTAAT
AATAACTCAGTAAATATTTATGAAGTGCTTTCGTGGTAAGAATGAGGCTG
CATTAGGGCAGGGAACAAAAGCAGGGGACTGAACATCCTTAAGCCTAATG
GTTATGGGGTCACAAAGATATATCTATATATCCTAAATATAACCTGCTCA
TTCCATATAATGCTACCAGTATATATATTTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_c01.b1 MSMg01no365_c01.b1 CHROMAT_FILE:
MSMg01no365_c01.b1 PHD_FILE: MSMg01no365_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:33 2005
         (535 letters)



>mm_chr2_85752033_85752967
          Length = 935

 Score = 1011 bits (523), Expect = 0.0
 Identities = 529/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgacaaatgaagattatagttgtcaaaatcccataaaacccaaaacatata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gaattcttttgacaaatgaagattatagttgtcaaaatcccataaaacccaaaacatata 804

                                                                       
Query: 65  tcaatgatgcttttgaatataggaggagagatattttattaaaattgtgaaaattttatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tcaatgatgcttttgaatataggaggagagatattttattaaaattgtgaaaattttatt 744

                                                                       
Query: 125 aattatttccctaaaatataagattttgagagagatatgaatgaaagtctatgaatcaaa 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 743 aattatttccctaaaatataagattttgagagagatgtgaatgaaagtctatgaatcaaa 684

                                                                       
Query: 185 taaaatcaagtggatttcctggccccatttttttcttgtggacaattctcaatctgatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taaaatcaagtggatttcctggccccatttttttcttgtggacaattctcaatctgatat 624

                                                                       
Query: 245 tagatcccatacttattgcttgatatctttaccaagatgttttgaatggtatttcctcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tagatcccatacttattgcttgatatctttaccaagatgttttgaatggtatttcctcat 564

                                                                       
Query: 305 aagtgatttccatataaatataatgcattcttctgtcagggtattttcagatttatccaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagtgatttccatataaatataatgcattcttctgtcagggtattttcagatttatccaa 504

                                                                       
Query: 365 gtaatatctaagaggatagtattttaatttgaaacctaactcttgctgtcttttacaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtaatatctaagaggatagtattttaatttgaaacctaactcttgctgtcttttacaaaa 444

                                                                       
Query: 425 gcacttaattaccctaaattcttttttatctgtaagaaacaaattttactttctatcttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcacttaattaccctaaattcttttttatctgtaagaaacaaattttactttctatcttc 384

                                                              
Query: 485 tagcagtgctaatgctatacttttgactccaatacacacacacacacacac 535
           |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 tagcagtgctaatgctatacttttgactccaacacacacacacacacacac 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_c01.g1 MSMg01no365_c01.g1 CHROMAT_FILE:
MSMg01no365_c01.g1 PHD_FILE: MSMg01no365_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:33 2005
         (596 letters)



>mm_chr2_85575983_85576978
          Length = 996

 Score = 1145 bits (592), Expect = 0.0
 Identities = 595/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggaaagtaactatctactcaaggaagatgcaatatgttcagaggtttataataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaggaaagtaactatctactcaaggaagatgcaatatgttcagaggtttataataaaa 260

                                                                       
Query: 61  caatgtcatataagatagtaaaaataatattactaaggtcatattttaaaatcagctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatgtcatataagatagtaaaaataatattactaaggtcatattttaaaatcagctaca 320

                                                                       
Query: 121 attctgtgcctcttactaagagtctcaaatttcattgaaagacataggtaaaacatgaat 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcagtgcctcttactaagagtctcaaatttcattgaaagacataggtaaaacatgaat 380

                                                                       
Query: 181 atcctcttcaaacttctacttcatatcaaccctttctcaaattcaacttgtatgtccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctcttcaaacttctacttcatatcaaccctttctcaaattcaacttgtatgtccctt 440

                                                                       
Query: 241 atttttctagggcatctaattttttagattataatacaaaaattctcctttcccgttcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttttctagggcatctaattttttagattataatacaaaaattctcctttcccgttcct 500

                                                                       
Query: 301 ctatctaaaccatcccatttatccctcgctctctcctttaagttcattgcccaattaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatctaaaccatcccatttatccctcgctctctcctttaagttcattgcccaattaaac 560

                                                                       
Query: 361 ataattgttattgcacacatgtatgcatatgtattatgcatgtgcatatgatatatataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataattgttattgcacacatgtatgcatatgtattatgcatgtgcatatgatatatataa 620

                                                                       
Query: 421 aatctataatctatatctatatttatatatccatatctattgctctttgatttgctgaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatctataatctatatctatatttatatatccatatctattgctctttgatttgctgaat 680

                                                                       
Query: 481 gttagataattaataataactcagtaaatatttatgaagtgctttcgtggtaagaatgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttagataattaataataactcagtaaatatttatgaagtgctttcgtggtaagaatgag 740

                                                                   
Query: 541 gctgcattagggcagggaacaaaagcaggggactgaacatccttaagcctaatggt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctgcattagggcagggaacaaaagcaggggactgaacatccttaagcctaatggt 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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