BAC Information

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BAC

Clone NameMSMg01-366G03
Chromosome2 (Build37)
Map Location 86,392,545 - 86,596,128
singlet/doubletdoublet
Overlap geneOlfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090
Upstream geneOlfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079
Downstream geneOlfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366G03.T7 (MSMg01no366_g03.b1)MSMg01-366G03.TJ (MSMg01no366_g03.g1)
ACCAG474109AG474110
length749747
length of high quality
(start - end)		552 (54 - 605)503 (80 - 582)
definitionCHROMAT_FILE: MSMg01no366_g03.b1 PHD_FILE: MSMg01no366_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:13 2005CHROMAT_FILE: MSMg01no366_g03.g1 PHD_FILE: MSMg01no366_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,595,580 - 86,596,128)(86,392,545 - 86,393,047)
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTACACACCTTACAGATTTGCCAATAGAAATTCTAATT
TATCTATATATTAAATATATAACAATATTAAATTAGCTATTAATATCACA
AAGAAATTAGATTCATATGCAGGTAATATCTGGAAATTGGGAACTTTAAA
ATAACAATTAACTAATCCCACATCATTTTTATATTTTAATCAAAATATAA
TAACATTACTTCTCAAAACTTTCTATCTTTTTTTCTAGCCCCTTCCTTTA
TGCCCTCCTGTCAGACTTATGACTTCTTTATCATAGATTATTTTACACAT
ATACAAACACCCATATATACACATATATTCCCACATGCCGAAGTACATAA
ATAAAGCAAGGTGAGTTAGTTTTTGCTGTTTATGTGTTTATAGTTTCACA
AAAACTATTTTTGTTTGAACAACCAATGAAGGGACTCACATCCCTTGGCA
GTCATTAGTTGCCTTAATTTCTTTGGGTAGAGGTAAGATACTGTAATAAG
TACATGGGTGTTTGCAGGCATGAGTCTACTATGGTGAGATTTCCTCTTCC
ACATCAACATATAACTAATTTTTACAAATAAAAAATTTAATGGTCAAAAA
TTCTTTTACTTTTGACCTACAAATGCATTGGCCCAGGCATATATTTTATA
CCTATTTTAGTATTTAATCCCTACAGATATCATGTGATCCAATACCGCN

NNTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAACTCACTGCATTTGTAG
ATGTCTGTATTAGACTGGACTAGTTGGGCTCACCAACATTTAAATCATGT
TTTGAGAGAGCCTCTACAATGCCATCCTTTCCTGAAGGAAAACAATGAAA
TATTATTTTCTTTAATGCTAAACTTACACTTAGTTTGCCATATTTTTTTA
AACATCTTGCTACCTAACATTGTAACTTTTATTAATTCAGTGGGCTACAA
ATCACAGAAGAAAGTAGAAGGAGATATTTGAAAATAAATGTTTCAGATGG
AGAAGGATGATGAGGGAGTCAAGAATTGAAGTGACAATAATTAAGTTTTA
TTTTACTAATGTATGAAACTGTTGAATATGTAAACCAAAATTAAATCAAA
AGCAGTATAATTTCATAAAACAGAACTACATGCTGATATATACAAATGTT
ACCGTGTTTATTTTAGTAGAAAATTCTGCTTGACGATTCATAATCCATTT
TATACATACTATAATTTCTCTCTCTCATGCACAAGATGCATCAAAAGATA
TACCTTCAGTTCTATAAGATATACCCTCAGTTCTATAGTTACAAAAATGT
TTATATTTTGCAACAGGCTTAGCAGTTATGTGTAGTTAAAATGGTCCAAG
AAGGAAATTATTCTCCCCCAAAAAAAGATGAAATTTGGAAACTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_g03.b1 MSMg01no366_g03.b1 CHROMAT_FILE:
MSMg01no366_g03.b1 PHD_FILE: MSMg01no366_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:13 2005
         (552 letters)



>mm_chr2_86595180_86596131
          Length = 952

 Score = 1038 bits (537), Expect = 0.0
 Identities = 546/549 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacacaccttacagatttgccaatagaaattctaatttatctatatattaaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 ggaattctacacaccttacagatttgccaatagaaattctaatttatctatatattaaat 890

                                                                       
Query: 64  atataacaatattaaattagctattaatatcacaaagaaattagattcatatgcaggtaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 atataacaatattaaattagctattaatatcacaaagaaattagattcatatgcaggtaa 830

                                                                       
Query: 124 tatctggaaattgggaactttaaaataacaattaactaatcccacatcatttttatattt 183
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatctggaaattgtgaactttaaaataacaattaactaatcccacatcatttttatattt 770

                                                                       
Query: 184 taatcaaaatataataacattacttctcaaaactttctatctttttttctagccccttcc 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 769 taatcaaaatataataacattacttctcaaaactttctatctttttttctagcccctttc 710

                                                                       
Query: 244 tttatgccctcctgtcagacttatgacttctttatcatagattattttacacatatacaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttatgccctcctgtcagacttatgacttctttatcatagattattttacacatatacaa 650

                                                                       
Query: 304 acacccatatatacacatatattcccacatgccgaagtacataaataaagcaaggtgagt 363
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 649 acacccatatatacacatatattcacacatgccgaagtacataaataaagcaaggtgagt 590

                                                                       
Query: 364 tagtttttgctgtttatgtgtttatagtttcacaaaaactatttttgtttgaacaaccaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tagtttttgctgtttatgtgtttatagtttcacaaaaactatttttgtttgaacaaccaa 530

                                                                       
Query: 424 tgaagggactcacatcccttggcagtcattagttgccttaatttctttgggtagaggtaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgaagggactcacatcccttggcagtcattagttgccttaatttctttgggtagaggtaa 470

                                                                       
Query: 484 gatactgtaataagtacatgggtgtttgcaggcatgagtctactatggtgagatttcctc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gatactgtaataagtacatgggtgtttgcaggcatgagtctactatggtgagatttcctc 410

                    
Query: 544 ttccacatc 552
           |||||||||
Sbjct: 409 ttccacatc 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_g03.g1 MSMg01no366_g03.g1 CHROMAT_FILE:
MSMg01no366_g03.g1 PHD_FILE: MSMg01no366_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:13 2005
         (503 letters)



>mm_chr2_86392345_86393247
          Length = 903

 Score =  911 bits (471), Expect = 0.0
 Identities = 495/503 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaactcactgcatttgtagatgtctgtattagactggactagttgggctcaccaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaactcactgcatttgtagatgtctgtattagactggactagttgggctcaccaacat 260

                                                                       
Query: 61  ttaaatcatgttttgagagagcctctacaatgccatcctttcctgaaggaaaacaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaatcatgttttgagagagcctctacaatgccatcctttcctgaaggaaaacaatgaa 320

                                                                       
Query: 121 atattattttctttaatgctaaacttacacttagtttgccatatttttttaaacatcttg 180
           || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 atgttattttctttaatgctaaacttacacttagtttgccatattattttaaacatcttg 380

                                                                       
Query: 181 ctacctaacattgtaacttttattaattcagtgggctacaaatcacagaagaaagtagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacctaacattgtaacttttattaattcagtgggctacaaatcacagaagaaagtagaa 440

                                                                       
Query: 241 ggagatatttgaaaataaatgtttcagatggagaaggatgatgagggagtcaagaattga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagatatttgaaaataaatgtttcagatggagaaggatgatgagggagtcaagaattga 500

                                                                       
Query: 301 agtgacaataattaagttttattttactaatgtatgaaactgttgaatatgtaaaccaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 agtgacaataattaagttttattttactaatgtatgaaactgttgaatatataaaccaaa 560

                                                                       
Query: 361 attaaatcaaaagcagtataatttcataaaacagaactacatgctgatatatacaaatgt 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 attaaatcaaaagcagtataatttcataaaacagaagtacatgctgatatatacaaatgt 620

                                                                       
Query: 421 taccgtgtttattttagtagaaaattctgcttgacgattcataatccattttatacatac 480
           ||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 621 tactgtgtttattttagtagaaaattctgcttgaagattcaaaatccattttatacatac 680

                                  
Query: 481 tataatttctctctctcatgcac 503
           || ||||||||||||||||||||
Sbjct: 681 taaaatttctctctctcatgcac 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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