BAC Information

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BAC

Clone NameMSMg01-366L12
Chromosome2 (Build37)
Map Location 119,554,508 - 119,554,747
singlet/doubletsinglet
Overlap geneRtf1
Upstream geneLOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622
Downstream geneItpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366L12.T7 (MSMg01no366_l12.b1)MSMg01-366L12.TJ (MSMg01no366_l12.g1)
ACCAG474366AG474367
length771778
length of high quality
(start - end)
461 (79 - 539)240 (84 - 323)
definitionCHROMAT_FILE: MSMg01no366_l12.b1 PHD_FILE: MSMg01no366_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:38 2005CHROMAT_FILE: MSMg01no366_l12.g1 PHD_FILE: MSMg01no366_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACATC
CGCGGAATTCCCTAATTGTTCGACAATACAGGCACACATCGACATTCTTA
GCTTTCCTCGTATTTTCATTTAAACTGTAGAATTGGCTTGTCAAAGTCTA
TGAAAAACTGCTAGTGCTATTATTGGAATTTCACTGAATTTATAGATAAA
GTTATAAATAATAAATATCTCAATAAGATTGAAAGCTGGGCACAATATTA
CACACTAGTACTCCCAACATTTGGGATGTGAAGGATTGCTGTAAGTTTAA
GGCTAGTGAGTTAAGGCTGGGCTATTTTATGAAACCTTATCTCAAAAATA
CATACATACATACATACATACATACATACATACATGCATACATACATACA
TACATACATACATACATACATACATACATACTACAAATAACAATGAATCT
TCTGGCCCATTAATATGAATTCATAGCACATATATCTAGCAACGGATAAA
AATTCAAAATATAATATATTTTTAAACCCTTTGTGAATAATAACAAATCA
AGTCCCATTTTTTTTTATTTTAAAGGGACAATACATCTTGTGTAATCTAC
GTTGGCTCGGAACTCATATGGAGCTAGGGAAGAACCTTGTAACCTTCATT
CCCTATCCCCATTCCGGAGCCCGGGAATCCCACCTCCCCTTTGGTTGCCC
GGGATCCCCCCCCCGAACTCTCGTGTTACGGAACATCTCCCCCTCTTGAC
TTTCCCTCCCCTCTCTTATTT
NNNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGTGGCACACACATA
TAAGGCCAAGTCTTGGGAGATGTCAGCAGGAGTTCAAGGCCAGCCTCAGC
TGCATTACTGTTCAGAGCCAATCTGGGTTATATAGGCCCTGTTTCAAAAA
AAATAAGATTAGGGCCAGTGAGATGCCATAGCAGGTAAAAGTGTTTGCTA
CGAATGCTTGGCGCCTGAATTCAAGCCTAGAAGCCATAGAGGTGAGAGGA
GAGAAACTACTCAAGAAAGTGCCCTTTTACCTGCACCTCCCCCACATAAC
AAAATAATTAAGTTAAAGTAAAATTATAGCCGGGCAGTGGTGGCACATGC
CTGAAATCCCAGCCCTTGGGAGGCAGAGGCAGGCAGATTTCTGAATTCGA
GGCCAGCCTGATCTACAGAGTGAGTTCCAGGACCACCAGAGCTACACAGA
GAAACCCCATCTAGGAAGAAAACAAACAAACAAAAAAAATTTTTTTATGT
TATCTATATCTGGTGTTAAATGATGGGAATTGCGCGGAATCAGCATGGGT
GCACTCTACCTCTATTCTGTCTACAAGATTTTTTTACTGGGATACAAAAA
AAAAACCCGCCGGTTTTGTTTGGCTAAAATTTCTTTTAAAAAGGTGTGAC
CTGGATTGGCTTTAACCCCCCCCAGGGATTGGTTTTTTATTTTTCCTCAT
ATCTCTTCCCTTGTTTATGTCTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_l12.g1 MSMg01no366_l12.g1 CHROMAT_FILE:
MSMg01no366_l12.g1 PHD_FILE: MSMg01no366_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:39 2005
         (240 letters)



>mm_chr2_119554308_119554947
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtggcacacacatataaggccaagtcttgggagatgtcagcaggagttcaaggccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggtggcacacacatataaggccaagtcttgggagatgtcagcaggagttcaaggccag 260

                                                                       
Query: 61  cctcagctgcattactgttcagagccaatctgggttatataggccctgtttcaaaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcagctgcattactgttcagagccaatctgggttatataggccctgtttcaaaaaaaa 320

                                                                       
Query: 121 taagattagggccagtgagatgccatagcaggtaaaagtgtttgctacgaatgcttggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagattagggccagtgagatgccatagcaggtaaaagtgtttgctacgaatgcttggcg 380

                                                                       
Query: 181 cctgaattcaagcctagaagccatagaggtgagaggagagaaactactcaagaaagtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgaattcaagcctagaagccatagaggtgagaggagagaaactactcaagaaagtgcc 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)