BAC Information

Click to search

BAC

Clone NameMSMg01-367A17
Chromosome2 (Build37)
Map Location 82,893,897 - 82,894,467
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
Downstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367A17.T7 (MSMg01no367_a17.b1)MSMg01-367A17.TJ (MSMg01no367_a17.g1)
ACCAG474610AG474611
length735754
length of high quality
(start - end)
573 (20 - 592)508 (76 - 583)
definitionCHROMAT_FILE: MSMg01no367_a17.b1 PHD_FILE: MSMg01no367_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:05 2005CHROMAT_FILE: MSMg01no367_a17.g1 PHD_FILE: MSMg01no367_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATACGGAGAGGATCCGCGGAATTCAGTGTCTTTCAACCATGGTT
CATGGTGAGCTGGTCAGGTTGTTTCTCAGCCATGGTGAGGAAGACCATCT
GACACAGGGAAAGGAGACAATCAGGGCCATGGACAAGGTATGCCTTTGAA
GGAAAAATGCCTAGTAATGCATTTCTTCAAGCAAAGATTGCTTTTTAATT
TCTATCATCCTCTAATAAAGCCATCTAATTATCAATCATGCATGGTGACT
TAGGTTTAGAAAGTATTTTTATATTCTTGTTGGATTCTTGACATTTTTCT
AGCTGTCTCCTAAGTATATCCATGGCATAGTATGTTTCATGGGTTTTATA
TTTTATATTTAATGTCTGAAGAGTTTTTCTGTGATGATTCAATTTATGTA
AGGATATATATTTGTAAATCGAATGTGACCTTTAGTCTTTATCAATAGGG
TTAGTTACTGTGCTTGTTACTATATGGCCAACAGAGGTAGTTCATCTAAA
ATGTTTCCAGATTGATTTTCTTATTTCACATCCCAGAAACACCACTGACT
TTACCAGTTATATTATTTTACCCATACATACCTATCAGATCTTTCACCTT
AAAAAATATCACTATTAGGTTAACACAGTAATTTAAATCTGTCACCTACT
GGCAGCTTTTAATTTTACACTAATGCATTCCTTGAAAAAGCTTTCTTACA
TCTGCAATCTCTGGGACTTTGTCTTAAAAAAAAGN
TCCGATGATGTGGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCACTAAACTCTCTGACTCTAGGC
TTTTTGTTTGGGAGAATTTTAATGGCTATTTTAAAATTTTTTATGGGTTA
TAAGGCTGTTTAAATAGTTTACCTCACCTTGATTTAAATTTGATAAGTAG
TATCTCTCCAGAAAATCATCCATTTCATTAAGATTTTCAATTTTGTGAAG
TACAGGCTTTTGAAGTAAGCTCAAATGATTCTTTGAATTTCTCCAGTGTC
TGTTATTAAGTTTATTTGTTTATTTGGATACTGTCTCTCTGTCTTTTGGT
TAATTTTGCTAAGAGTTTATCTATCATTTTTATTTTATCAAAAACAGGTC
ATGGTTTGGTTGATCCTTTTATTGTTTTCTTTATTTGTGAATGATTTTAG
TCCTGATTTTCATTATGTTCTACCTTGGACTCCTCTTCAATGTCTTTTTT
TTTTTCAGTTGTACTTTTAAATACTGATAAGAGAACTTTCTAATTTCTTT
ATGGTGGCACTTAGTACTATGAAATTTGCTCTTAGTACTATTTTTATTTT
GCCCCATAAATTTGGGTATGCTGTGCCTTCATTTTCACTGCATTCTAGAA
AGTTGAAATTTCTTTCTTTATTTCTTTCCTGGACCCCAGATCTTTGAGAG
AGAGATGTTCAACTTCCTTGAATGTGTAGGTTTTCTGGGGCTTTTGGCTT
TGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_a17.b1 MSMg01no367_a17.b1 CHROMAT_FILE:
MSMg01no367_a17.b1 PHD_FILE: MSMg01no367_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:05 2005
         (573 letters)



>mm_chr2_82893692_82894670
          Length = 979

 Score = 1054 bits (545), Expect = 0.0
 Identities = 562/571 (98%), Gaps = 6/571 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagtgtctttcaaccatggttcatggtgagctggtcaggttgtttctcagccatg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gaattcagtgtctttcaaccatggttcatggtgagctggtcaggttgtttctcagccatg 717

                                                                       
Query: 66  gtgaggaagaccatctgacacagggaaaggagacaatcagggccatggacaaggtatgcc 125
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 716 gtgaggaagaccatctgacacagggaaaagagacaatcagggccatggacaaggtatgcc 657

                                                                       
Query: 126 tttgaaggaaaaatgcctagtaatgcatttcttcaagcaaagattgctttttaatttcta 185
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tttgcaggaaaaatgcctagtaatgcatttcttcaagcaaagattgctttttaatttcta 597

                                                                       
Query: 186 tcatcctctaataaagccatctaattatcaatcatgcatggtgacttaggtttagaaagt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcatcctctaataaagccatctaattatcaatcatgcatggtgacttaggtttagaaagt 537

                                                                       
Query: 246 atttttatattcttgttggattcttgacatttttctagctgtctcctaagtatatccatg 305
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 atttttagattcttgttggattcttgacatttttctagctgtctcctaagtatatccatg 477

                                                                       
Query: 306 gcatagtatgtttcatgggttttatattttatatttaatgtctgaagagtttttctgtga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gcatagtatgtttcatgggttttatattttatatttaatgtctgaagagtttttctgtga 417

                                                                       
Query: 366 tgattcaatttatgtaaggatatatatttgtaaatcgaat------gtgacctttagtct 419
           ||||||||||||||||||||||||||||||||||||||||      ||||||||||||||
Sbjct: 416 tgattcaatttatgtaaggatatatatttgtaaatcgaatgtgaccgtgacctttagtct 357

                                                                       
Query: 420 ttatcaatagggttagttactgtgcttgttactatatggccaacagaggtagttcatcta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttatcaatagggttagttactgtgcttgttactatatggccaacagaggtagttcatcta 297

                                                                       
Query: 480 aaatgtttccagattgattttcttatttcacatcccagaaacaccactgactttaccagt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaatgtttccagattgattttcttatttcacatcccagaaacaccactgactttaccagt 237

                                          
Query: 540 tatattattttacccatacatacctatcaga 570
           |||||||||||||||||||||||||||||||
Sbjct: 236 tatattattttacccatacatacctatcaga 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 979
Length adjustment: 10
Effective length of query: 563
Effective length of database: 969
Effective search space:   545547
Effective search space used:   545547
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)