BAC Information

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BAC

Clone NameMSMg01-367E13
Chromosome2 (Build37)
Map Location 180,295,676 - 180,296,198
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1
Downstream gene1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367E13.T7 (MSMg01no367_e13.b1)MSMg01-367E13.TJ (MSMg01no367_e13.g1)
ACCAG474794AG474795
length738771
length of high quality
(start - end)		533 (20 - 552)36 (148 - 183)
definitionCHROMAT_FILE: MSMg01no367_e13.b1 PHD_FILE: MSMg01no367_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:23 2005CHROMAT_FILE: MSMg01no367_e13.g1 PHD_FILE: MSMg01no367_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCCTATTCCGAGAGGATCCGCGGAATTCAATTCCTAGCAACCACAT
GGTGGCTCACAATCATCTGTAATGAGATCTGATGCTCCTCTGGTGTCTGA
AGAGAGCTACAGTGTACTCAGATACATAAAATAAATAAATCTTTGAAAAG
TTGTGTGTGGAATATAAATCAGCTTGGGCCTAATATGTGCTGAGCTCTGG
TTTTAATTCCCAATACTGGAACAAAAATCAAAATAAGACCAAAAAACAAG
TAGATTATGAATGATTTCAGACATCCTAATGTGACCCAAGACCCCAGAGC
ACAGGCTAACTCCCTCCTGGGGCATCTCTGGCGCCACATGGGAAGCCTCC
TGATTGTCACTGCCATCTCTCCGGAGTTCTGATGCCCAGGAGCTGCCCTG
GTCAGCTCTGGCAGGTAATGCAGATAAGAACATAAGGCACCCACAGTGAC
ACACTTCGCAAGGCCCAGCGATTAGAATACCAACTCTGAAGGAGGCCTGT
GCTCCCCTCTTTCAGACACAGAAGAACTGAGAATAGAAGGGTGAGCCCTT
GTTCCAGACATTATCAGAACACAAGCTAGGACCCCCTGACTGCTGTGGAT
ATGGAGGCAAGATTACATCCCAAAGAAACTCCCATCCCCCCTGTCATAAA
GCAAGCCAACTGGCCAACTGGGACCCTAAAGGATTTCTGGGGGCTAAAAC
AAGCAGCTTCTTCAAATTGGGGTCCCCCCTACCAAGGG

CAATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTATCAGCTCATGAAACCCAAGCTCTACAGAA
ATAAGTGCGGGAGGTAGAAAACAAGGCCAGAAATGGGGGGGGGGGTTCAC
CTTGTTCTGGGGTCTGTGATGTCTGGACTGCCAGGCACCTGCCAACCCAG
GACACATCAGTAGTGCTGAGAGATCCACAGGGCGGGAACCATTGTCTGCA
AGGCAGGTGAGGACCCTGGCCCACTGCACATCGGCCCAGCTGGAGTGGCA
AGCCTGACTCTTTTAGAGAAGCAGAAACCATGGCTTCTCTATGGTTCTGA
ACGGTGTTTCTAGCGTTCCTGTCTTATGCAGACATGCCCTAATGTCTATA
GACCTCTCAGGTTATTGTTTGCTGTAGAGATGGGCCCAGTAATTTTTCCC
CTACCTCTTTTCCTCCCCTACCTCCCTTTCTTTCTCTTCTCCCCCTCCTT
ATTCCCCTTATTTTCTTTTCTTCCCCCTTCCCTTTTCCCCTTTTTATTCG
TTTATCTTTTCTCCCCCCTCTTTTTTTCCCCCCCTCCTTCCTTATTTTTT
CTCCCTCTTTTCTCTTCCCTTTTTCTACTTTTCTCCCTCTTTTCCCCTTT
TTTTCTCTTTTTTCTCCCCCCCCCTCTTTCTTTCGCTTCCTCCTCTTCTC
TCCGTCTATTCCTTCTCCCCTCTCTTTTTATTCCTCTTTTTTTTTCCTCT
TCCCCTTTTCTTTCTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_e13.b1 MSMg01no367_e13.b1 CHROMAT_FILE:
MSMg01no367_e13.b1 PHD_FILE: MSMg01no367_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:23 2005
         (533 letters)



>mm_chr2_180295466_180296398
          Length = 933

 Score =  980 bits (507), Expect = 0.0
 Identities = 519/523 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  ttcaattcctagcaaccacatggtggctcacaatcatctgtaatgagatctgatgctcct 70
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ttcaattcccagcaaccacatggtggctcacaatcatctgtaatgagatctgatgctcct 270

                                                                       
Query: 71  ctggtgtctgaagagagctacagtgtactcagatacataaaataaataaatctttgaaaa 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctggtgtctgaagagagctacagtgtactcagatacataaaataaataaatctttgaaaa 330

                                                                       
Query: 131 gttgtgtgtggaatataaatcagcttgggcctaatatgtgctgagctctggttttaattc 190
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 331 gttgtgtgtggaatataaatcagcttgggcctaatatgtgcagagctctggttttaattc 390

                                                                       
Query: 191 ccaatactggaacaaaaatcaaaataagaccaaaaaacaagtagattatgaatgatttca 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ccaatactggaacaaaaatcaaaataagaccaaaaaacaagtagattatgaatgatttca 450

                                                                       
Query: 251 gacatcctaatgtgacccaagaccccagagcacaggctaactccctcctggggcatctct 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gacatcctaatgtgacccaagaccccagagcacaggctaactccctcctggggcatctct 510

                                                                       
Query: 311 ggcgccacatgggaagcctcctgattgtcactgccatctctccggagttctgatgcccag 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggcgccacatgggaagcctcctgattgtcactgccatctctccggagttctgatgcccag 570

                                                                       
Query: 371 gagctgccctggtcagctctggcaggtaatgcagataagaacataaggcacccacagtga 430
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gagctgccctagtcagctctggcaggtaatgcagataagaacataaggcacccacagtga 630

                                                                       
Query: 431 cacacttcgcaaggcccagcgattagaataccaactctgaaggaggcctgtgctcccctc 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cacacttcgcaaggcccagcgattagaataccaactctgaaggaggcctgtgctcccctc 690

                                                      
Query: 491 tttcagacacagaagaactgagaatagaagggtgagcccttgt 533
           |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 691 tttcagacacagaagaactgagaatagaggggtgagcccttgt 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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