BAC Information

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BAC

Clone NameMSMg01-367F17
Chromosome2 (Build37)
Map Location 135,144,803 - 135,301,488
singlet/doubletdoublet
Overlap genePlcb1
Upstream geneHao1, Txndc13, LOC627897, LOC433478
Downstream geneLOC100043487, LOC100043786, LOC100043788, Plcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367F17.T7 (MSMg01no367_f17.b1)MSMg01-367F17.TJ (MSMg01no367_f17.g1)
ACCAG474849AG474850
length772746
length of high quality
(start - end)		444 (51 - 494)402 (58 - 459)
definitionCHROMAT_FILE: MSMg01no367_f17.b1 PHD_FILE: MSMg01no367_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:29 2005CHROMAT_FILE: MSMg01no367_f17.g1 PHD_FILE: MSMg01no367_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,144,803 - 135,145,242)(135,301,087 - 135,301,488)
sequence
NNNGGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTACATCTTCCAGAAGCAGTTTGAGCAGAACCAAATTTTT
AAGTAGTTAAATACAGTATTCCGTTAATATGTGAGTAGAAAGCAACTTGG
GTTAGAAGTAACCGATTTTCTAACTATATTTCTAGTTTGTTCTCAGGACT
GTAACATTCACCACTCTGCATTCTGTGTCATTGCAATCATTTCATCCTAT
GAATGATGAAATCCCAATACATGGGTTTCCTAACACCCCTGAGGGACATG
GAAGAGACCGGAATCTACCCCATTCCTTGCTATGTCTCCTCACCCTGCAG
TGACTGCATTTCACACCTGGTTTGCTACAACAGCTCAGATTTTGAGCTGT
TGACTTTGGGGGAGTCTTTCCCTTCCTTGTCTATCTCATTTTTCCTTGGC
TTCAGCAGCCCCTGTCCATCCTGTTCAGGCAGGGTGTTTTTCAGATTTGT
GACGGCGCCTTGCTTATGTTTTCTTACTTTCTTACCGAACTATGTCTACT
TTTAGCATACTTCCAATCTATACCTGCCGTCTCACTTTGCATTGTCCCCA
CCTGCTACCAAGTAACCTCTCCCTTTGATTTTTCTTTACAACCCTTTCCT
TTTTTTTCCCTTCTCCCTAATCCTTTTTTCCCTCCCTTTTATTTTGCTTT
CTGCTTTTTATCTCCTGTCCCCCCATTCCCATTTTTCTCCTTTTTCCCTT
CCGCCGTATTCTTCTCTCCTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGTCTCTGTCCCTTAAGTCTATGACAGACAAGAGATCATTTG
GAGTCAGGTCTGCATAGCAATAGATAACTGGTATGCTGCATTTGGGGTGA
CTTCGTGACACAGAGAACTCACATGTATATTCCCTTTCCCACCAGTGTTG
CAAACTACAGATTTCATTTGGAAGCTTGTAAGGTGCACCATCTGTTCTTC
TCATTTCCATAATTTCTCAAAAATCAGTTGCTTTGCCATTCTTAGGTTAG
GAAGAAAGGGAGAAAGAACGGGATGACCAAGAGAAAGGAAAAAGAGTCTC
CATCGTGGGGGGAGTGACAAGCCACTCCTGGAGGGAGTGACAGCAGTCAC
AGCTGTGCACTCTGCACAGCACCACAGCGTCTAGTCTGCCTGGGCACTGG
TGTGTTGTGTAAGGTGCACATTATACTCTGATGACTGGCCTTATGGTCAT
TGTCACTGACCCCTGTAAAGTGTCCTGTGACTCTCATAAGGTCCAGCTGT
ATTGTGTTTACAAATTCTCATTGTTTTCCTTTGAACAATTTTTGGGTGAT
GATATCCCCCTTATTTATCTTGTGTTTGACTCCTTTTTCTTTTTTTTTTT
TCTTCATAAGGTCTCCACTTTTGTGAATTACTCCTTTTCTTTTCACTTTT
CTGTTCCTTCTCTCTAAGATATTTTTCAGATATACTTCTTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_f17.b1 MSMg01no367_f17.b1 CHROMAT_FILE:
MSMg01no367_f17.b1 PHD_FILE: MSMg01no367_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:29 2005
         (444 letters)



>mm_chr2_135144599_135145442
          Length = 844

 Score =  843 bits (436), Expect = 0.0
 Identities = 439/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctacatcttccagaagcagtttgagcagaaccaaatttttaagtagttaaatac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctacatcttccagaagcagtttgagcagaaccaaatttttaagtagttaaatac 264

                                                                       
Query: 65  agtattccgttaatatgtgagtagaaagcaacttgggttagaagtaaccgattttctaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtattccgttaatatgtgagtagaaagcaacttgggttagaagtaaccgattttctaac 324

                                                                       
Query: 125 tatatttctagtttgttctcaggactgtaacattcaccactctgcattctgtgtcattgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatatttctagtttgttctcaggactgtaacattcaccactctgcattctgtgtcattgc 384

                                                                       
Query: 185 aatcatttcatcctatgaatgatgaaatcccaatacatgggtttcctaacacccctgagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatcatttcatcctatgaatgatgaaatcccaatacatgggtttcctaacacccctgagg 444

                                                                       
Query: 245 gacatggaagagaccggaatctaccccattccttgctatgtctcctcaccctgcagtgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacatggaagagaccggaatctaccccattccttgctatgtctcctcaccctgcagtgac 504

                                                                       
Query: 305 tgcatttcacacctggtttgctacaacagctcagattttgagctgttgactttgggggag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcatttcacacctggtttgctacaacagctcagattttgagctgttgactttgggggag 564

                                                                       
Query: 365 tctttcccttccttgtctatctcatttttccttggcttcagcagcccctgtccatcctgt 424
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 tctttcccttccttgtctatctcattttcccttggcttcagcagcccctgtccatcctgt 624

                               
Query: 425 tcaggcagggtgtttttcag 444
           ||||||||||||||||||||
Sbjct: 625 tcaggcagggtgtttttcag 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_f17.g1 MSMg01no367_f17.g1 CHROMAT_FILE:
MSMg01no367_f17.g1 PHD_FILE: MSMg01no367_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:29 2005
         (402 letters)



>mm_chr2_135300887_135301688
          Length = 802

 Score =  746 bits (386), Expect = 0.0
 Identities = 398/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtctctgtcccttaagtctatgacagacaagagatcatttggagtcaggtctgcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ctgtctctgtcccttaagtctatgacagacaagagatcatttggagtcaggtctgcatag 543

                                                                       
Query: 61  caatagataactggtatgctgcatttggggtgacttcgtgacacagagaactcacatgta 120
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 542 caatagataactggtatgctgcatttgaggtgactttgtgacacagagaactcacatgta 483

                                                                       
Query: 121 tattccctttcccaccagtgttgcaaactacagatttcatttggaagcttgtaaggtgca 180
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 482 tattccctttcccaccagtgttgcaaactacagatttcattcagaagcttgtaaggtgca 423

                                                                       
Query: 181 ccatctgttcttctcatttccataatttctcaaaaatcagttgctttgccattcttaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccatctgttcttctcatttccataatttctcaaaaatcagttgctttgccattcttaggt 363

                                                                       
Query: 241 taggaagaaagggagaaagaacgggatgaccaagagaaaggaaaaagagtctccatcgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 taggaagaaagggagaaagaacgggatgaccaagagaaaggaaaaagagtctccatcgtg 303

                                                                       
Query: 301 gggggagtgacaagccactcctggagggagtgacagcagtcacagctgtgcactctgcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gggggagtgacaagccactcctggagggagtgacagcagtcacagctgtgcactctgcac 243

                                                     
Query: 361 agcaccacagcgtctagtctgcctgggcactggtgtgttgtg 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agcaccacagcgtctagtctgcctgggcactggtgtgttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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