BAC Information

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BAC

Clone NameMSMg01-367F22
Chromosome2 (Build37)
Map Location 33,870,368 - 33,870,721
singlet/doubletsinglet
Overlap genenone
Upstream geneGarnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
Downstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367F22.T7 (MSMg01no367_f22.b1)MSMg01-367F22.TJ (MSMg01no367_f22.g1)
ACCAG474858AG474859
length804742
length of high quality
(start - end)		427 (48 - 474)358 (60 - 417)
definitionCHROMAT_FILE: MSMg01no367_f22.b1 PHD_FILE: MSMg01no367_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:30 2005CHROMAT_FILE: MSMg01no367_f22.g1 PHD_FILE: MSMg01no367_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCATTAATGCCAGTGAGGCTGGGTGTGGTGACGTAGTCTGTA
ACACTGCACTTGGATGGAGAAGCCGAAGCATCAGAAGCTCAAGGCCAACC
TTGGCTGCCTCAGCTACAGAAGACCTTGCCACAAAAAAAAAAAAAAAAAA
AAAAAAAGCAAACAAAACCAGAGGGAAGAGGCAGGAAGGATGGCTCAGTG
GTTAAGATCACTGGCTGTTCTTGCAGAGGACCTGAGCACAATTCCCAGAT
CCCACATAACATCTCACAACCATCTGTAACTCCAGTTCTGGGGGCTCTGA
CGCCCTCTTCTGACCTCTGCAAGTATTTCATGTATGTGGTGCACATACAT
GTGGAAAAAGCATTTAAACAGCCACAAGCACGAGAGATTTTGTGCTCAAC
ACACTAAGGTTTTCCACTCTTGGCACACTGTTGCACATGGAAACTGTCCA
TGCCACTCTCACACCATTTAAAATCTGCTTTGCAGNTTCCCTCTTCTTGG
NCCATATTTTTGCTAAAATTCTTTTTAAATAACAATTTTCTGGGCCAATG
TGGTTTTGGGGGTTTTTTCGTTGGTTTTTTTTCCTTAAAAAACATCACAC
TTTAAAATAAAAAACTTCCTTTTAAAAATACAATTTGTTCCTTCCTATCC
TTTATAAATTCTCCCCTTCCCATCTGTGGCAAAAAAATCATCGTTCATAC
CCCTTATTTCTTCCCACCTCCTCACACACATATTCCCTTAATACCCATTT
TTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCTGGAGCATAAAGAATTTCCTTTTTCATTTTTTAAAAGA
ACAACACCCACATACTTCCTCATGCGGCCCCCCACCTCCCCCGCCAAGGT
CTAAGAGGGAGAAAGGAATTACCTTGGACACATCACACAGAGGAGACTGA
CTGTAAGAACTGGTTGTCCAGGTGATAGAGAGTAGAGAAGCTGGCAGACC
AGTGGGGCGGGAGGGACACAGGAATGAGGTGTGTTCCAGGGGCCAAAGGC
AGGGGTGGCTAGGTAAAGATGGCAGCCAGGGAAGACATAGCAGATGATGG
AAGCACTCCTGAATGAGAGGGGAGGAGAAAAGGAGGGATAAAGGAAGGAT
GGGAAGAAGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNTTT
NNTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTNTTTTNTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_f22.g1 MSMg01no367_f22.g1 CHROMAT_FILE:
MSMg01no367_f22.g1 PHD_FILE: MSMg01no367_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:30 2005
         (358 letters)



>mm_chr2_33870168_33870925
          Length = 758

 Score =  677 bits (350), Expect = 0.0
 Identities = 353/354 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctggagcataaagaatttcctttttcattttttaaaagaacaacacccacatacttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttctggagcataaagaatttcctttttcattttttaaaagaacaacacccacatacttcc 495

                                                                       
Query: 61  tcatgcggccccccacctcccccgccaaggtctaagagggagaaaggaattaccttggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tcatgcggccccccacctcccccgccaaggtctaagagggagaaaggaattaccttggac 435

                                                                       
Query: 121 acatcacacagaggagactgactgtaagaactggttgtccaggtgatagagagtagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 434 acatcacacagaggagactgactgtaagaactggttgtccaggtgatagagggtagagaa 375

                                                                       
Query: 181 gctggcagaccagtggggcgggagggacacaggaatgaggtgtgttccaggggccaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gctggcagaccagtggggcgggagggacacaggaatgaggtgtgttccaggggccaaagg 315

                                                                       
Query: 241 caggggtggctaggtaaagatggcagccagggaagacatagcagatgatggaagcactcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 caggggtggctaggtaaagatggcagccagggaagacatagcagatgatggaagcactcc 255

                                                                 
Query: 301 tgaatgagaggggaggagaaaaggagggataaaggaaggatgggaagaaggagg 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgaatgagaggggaggagaaaaggagggataaaggaaggatgggaagaaggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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