Query= MSMg01no367_j08.b1 MSMg01no367_j08.b1 CHROMAT_FILE:
MSMg01no367_j08.b1 PHD_FILE: MSMg01no367_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:47 2005
(532 letters)
>mm_chr2_87148747_87149678
Length = 932
Score = 907 bits (469), Expect = 0.0
Identities = 514/529 (97%)
Strand = Plus / Plus
Query: 4 ggaattcattcttcttgggttttctaatgttcctcatttgcagtgggtgctgtttatggt 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatttattcttcttgggttttctaatgttcctcatttgcagtgggtgctgtttatggt 263
Query: 64 atttttgtttatgtatatgacaattctgttgtgcaacagcattataatagtgttagcaaa 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttttatttatgtatatgacaattctgttgtgcaacagcattataatagtgttagcaaa 323
Query: 124 aactgaccctgctctccagactcctatgtattttttccttagcaactcttcttttttgga 183
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 aactgaccctgctctccatactcctatgtattttttccttagcaacttttcttttttgga 383
Query: 184 aatctgttatgtaacagctactattccaagaatgcttatggatttatataccctaaaagg 243
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 384 aatctgttatgtaacagctactattccaagaatgcttatggatctatatacactaaaagg 443
Query: 244 aaacatttctgtgtttgcctgtgcaacacaaatgtattttgtccttacgttgggaggcac 303
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 444 aaacatttctgtgtttgcctgtgcaacacaaatgtattttgtccttatgttgggagccac 503
Query: 304 agagtgcctcttgctagcagctatggcctatgatcgttatgtggctatctgccaccctct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agagtgcctcttgctagcagctatggcctatgatcgttatgtggctatctgccaccctct 563
Query: 364 ccaatattctttacttatgaagaataaagtgtgtttacagctggtagctgcctcctggat 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 acaatattctctacttatgaagaataaagtgtgtttacagctggtagctgcctcttggat 623
Query: 424 cagtgggattccagtagaaattgggcagacctaccagatattctcccttcacttttgtgc 483
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagtgggattcctgtacaaattgggcagacctaccagatattctcccttcacttttgtgc 683
Query: 484 ttctaacagaatagatcactttttctgtgacattcccccacttctcaag 532
|||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 684 ttctaacaaaatagatcactttttctgtgacatccccccacttctcaag 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_j08.g1 MSMg01no367_j08.g1 CHROMAT_FILE:
MSMg01no367_j08.g1 PHD_FILE: MSMg01no367_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:47 2005
(571 letters)
>mm_chr2_87287001_87287971
Length = 971
Score = 917 bits (474), Expect = 0.0
Identities = 482/486 (99%), Gaps = 3/486 (0%)
Strand = Plus / Minus
Query: 1 ttaagatcacgtggctggtgttgtgggtatctggtggtagtcagcagactgtgtgcccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttaagatcacgtggctggtgttgtgggtatctggtggtagtcagcagactgtgtgcccta 427
Query: 61 gctaccccggtgctgctcagactggaagggagaaaaatatttttaagaaattaacttgtc 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gctaccccggtgctgctcggactggaagggagaaaaatatttttaagaaattaacttgtc 367
Query: 121 aggattctttgtaaaacgacttgccaatattgccaatattcaatttcttagttctaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aggattctttgtaaaacgacttgccaatattgccaatattcaatttcttagttctaatgt 307
Query: 181 catacttaccttttacattttaattattaatgattaattaattacttttctttaatctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 catacttaccttttacattttaattattaatgattaattaattacttttctttaatctta 247
Query: 241 tttcccctccctcctcttctccaatccttttctccagccacttctccacacttttccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttcccctccctcctcttctccaatccttttctccagccacttctccacacttttccttt 187
Query: 301 agaaaagtggatgggtgttgggacaggagcgagggtgcctcccccctt---ccccccccc 357
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 186 agaaaagtggatgggtgttgggacaggagcgagggtgcctcccccctttccccccccccc 127
Query: 358 accccacgcatatcaagttgcattaagactagccaatcttttcctaatggggctagatga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 accccacgcatatcaagttgcattaagactagccaatcttttcctaatggggctagatga 67
Query: 418 gggagtccagtaggggtagtacagtcagtcaacagagtcagagacagaccttgatgttag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gggagtccagtaggggtagtacagtcagtcaacagagtcagagacagaccttgatgttag 7
Query: 478 gaatcc 483
||||||
Sbjct: 6 gaatcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
