Query= MSMg01no367_l02.b1 MSMg01no367_l02.b1 CHROMAT_FILE:
MSMg01no367_l02.b1 PHD_FILE: MSMg01no367_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:56 2005
(493 letters)
>mm_chr2_9439346_9440238
Length = 893
Score = 909 bits (470), Expect = 0.0
Identities = 485/490 (98%)
Strand = Plus / Plus
Query: 4 ggaattctactcatccgacttgtgaagcaagcgctcacatatcaggtagcacgagctgcc 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctactcatcagacttgtgaagcaagcgctcacatatcaggtagcacgagctgcc 263
Query: 64 catcgctatgtttttgtgtatctgtatatatgggtcacagtaggaatgcttgagtcaaag 123
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 catcgctatgtttttgtgtatctgcatatatgggtcacagtaggaatgcttgagtcaaag 323
Query: 124 ggaaggaccgtgaaagcatcctcgcgacttagcatgtcacttggttctatgcaagactga 183
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaaggaccgtgaaagcatccttgcgacttagcatgtcacttggttctatgcaagactga 383
Query: 184 tgctgacctccagatgccttcttcccttcggtggtccttaaatacctccttgtcttcaag 243
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 tgctgacctccagatgccttcttcccttcagtggtccttaaatacctccttgtcttcaag 443
Query: 244 gagggacaccttctatctacagttcttatttcttactgacttaactatttggagtttatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagggacaccttctatctacagttcttatttcttactgacttaactatttggagtttatg 503
Query: 304 tgtatgagtgttttgcctgcatgtacatacatgcacgatgggcatgcctagtgtcccaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtatgagtgttttgcctgcatgtacatacatgcacgatgggcatgcctagtgtcccaga 563
Query: 364 gtccagaagagggcactggataccctaaaactagaattagtccattgtaagccaccatga 423
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 gtccagaagagggcactggataccctaaaactagaattagtccgttgtaagccaccatga 623
Query: 424 aggtgctgggtatcaaatctaggtcccccaaagggcagccagtacgcttaaccattgagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggtgctgggtatcaaatctaggtcccccaaagggcagccagtacgcttaaccattgagc 683
Query: 484 cggatggtgt 493
||||||||||
Sbjct: 684 cggatggtgt 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_l02.g1 MSMg01no367_l02.g1 CHROMAT_FILE:
MSMg01no367_l02.g1 PHD_FILE: MSMg01no367_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:56 2005
(503 letters)
>mm_chr2_9632478_9633380
Length = 903
Score = 874 bits (452), Expect = 0.0
Identities = 491/504 (97%), Gaps = 2/504 (0%)
Strand = Plus / Minus
Query: 1 tcttctttctgtttatgtgtttttataaaaactcagtaaaagagactcattggaagagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcttctttctgtttatgtgtttttataaaaactcagtaaaagagactcattggaagagat 644
Query: 61 attgttttatcatatttgcctgacatctgatctgatacttgagcttaagcaggcaacatg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 643 attgttttatcatatttgcctgacatctgatctgatacttgagcttaagcaggcaatatg 584
Query: 121 gctgatttgaagtccccaaggacctcatgctaatgagctgagagcagatagccatgattt 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 583 tctgatttgaagtccccaaggacctcatgctaatgagctgagagcagataaccatgattt 524
Query: 181 gctgatagctt-gctcactgtttccatcctacgataatctgcagtcatttggcccatttc 239
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gctgatag-ttggctcactgtttccatcctacgataatctgcagtcatttggcccatttc 465
Query: 240 tcaaagacctacttgaattgttcgaactcatgaacttcctaaaagtctagccactaaact 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 464 tcaaagacctacttgaattgttcgaacccatgaacttcctaaaagtctagccactaaact 405
Query: 300 ccatttggagaaccaatggctcctactcaagaacatttattttattcctttcttcagttc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ccatttggagaaccaatggctcctactcaagaacatttattttattcctttcttcagttc 345
Query: 360 aagagccttccggaacccaggataaggcatcagctggcagtgtttccttgctcaacaaga 419
||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 344 aagagccttcccaaacccaggataaggcatcagctggctgtgtttccttcctcaacaaga 285
Query: 420 aattttcataccgaccagatatcatgcttataactggcccaaatcacaccggagtttccc 479
|||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 284 aattttcataccaaccagatatcatacttataactggcccaaatcacatcggagtttccc 225
Query: 480 tgtcttattggtttggaaaccaga 503
||||||||||||||||||||||||
Sbjct: 224 tgtcttattggtttggaaaccaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
