BAC Information

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BAC

Clone NameMSMg01-367O24
Chromosome2 (Build37)
Map Location 123,027,003 - 123,027,485
singlet/doubletsinglet
Overlap genenone
Upstream gene4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367O24.T7 (MSMg01no367_o24.b1)MSMg01-367O24.TJ (MSMg01no367_o24.g1)
ACCAG475285AG475286
length775771
length of high quality
(start - end)
487 (48 - 534)502 (79 - 580)
definitionCHROMAT_FILE: MSMg01no367_o24.b1 PHD_FILE: MSMg01no367_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:14 2005CHROMAT_FILE: MSMg01no367_o24.g1 PHD_FILE: MSMg01no367_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAAGTGTCTCTTCCTTTAGTGCCCATGTTCTTACTGATGCTTT
AGTCTATATTGTTTAAACTCTGTATTGTTAGATGCCTCTCATTCTAAAGT
CTTTCCAGCCTCACTTTCATCTTATTAGCTACAGATGCCACAGCTACTCT
GTGTGAGGTATGACCAACTTGACACAGATGCCATCTGACATCTTCTTTCT
CAGTGTTCTTTATTTCTTGCTATCTACCTTTAACCCTGTTAGAAGTCCCT
ATGTCTATCCTGGAAGAAAGCAGAGTTAATACAATGTAAATATTTGCCCA
TTCCCATTGGCCGATATGTTATATTGACTCTTAGTTTCCCCTACATCTTA
CTTGGAATTCTCAAATATATTTTGTATGGATATTGGAGAAAATTTTACAG
GCTCCAGCAATCAGTCATATGTTTACTTTCAGGTTTGCCAATGTATCATC
AAAGGATCTTATTACCTATCTGGGTCACAGAAGTAAAATGTTGTTTTCTT
TCTTGGCTGTTTCATTTCCTCTATCATCCATTCCTGAATTCTAGAAATAT
CCTCTTGAATTCAAGCAGTATTGTGGCAGTGCTTCATCTCAGGCTCTCTG
AAAATAAACGGTTAAATTTAAGAGAAATGAAATGGACTTTTGGGTATTCC
AATCCTTGTCCCAAAAGGTAATCCCTTTACGGTTGCCCCCTTACAAATCT
CCAGCCCCCCTTCTCAAAATATTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATTGGTTCCCTGAACTGTA
AAGTGAGGGCTATTATGGTTGGAAAGGCCAAATGGAAGCCTTTAGAGTTG
CCTCTGCCAAAGAAAATAGTGAATCAAAAACAGTATCGTATTCCTGGAGG
CATTGCAGAAATTACTGCAACTATCAAGGACTTGAAAGATGCAGGGGTGG
TGGTTCCCACTACATCTCCGTTTAACTCTCCTATCTGGCCAGTGCAGAAA
ACAGATGGATCATGGAGAATGACAGTTGATTATCGAAAACTAAATCAGGT
AGTAACTCCAATTGCAGCTGCTGTACCAGATGTAGTTTCGTTACTTGAGC
AAATTAACACATCTCCTGGCACCTGGTATGCGGCTATTGATCTGGCAAAT
GCCTTCTTCTCAGTACCTGTCCATAAGGACCACCAGAAGCAATTTGCTTT
CAGTTGGCAAGGCCAACAGTATACCTTCACAGTTTTGCCTCAAGGATATA
TTAACTCTCCTGCCCTGTGTCATAATTTAGTTAGAAGGGATCTTGATCGT
TTGGATCTTCCCAAAATATCACATTGGTGCACTATATTGATGACATTATG
CTGATTGGACCAAGTGAGCAGGGAATAACACCCCCTTTGGACTCATTGGT
AAACCAATGCGTACCACAGGATGGGGAATAAATCCCCCCCAAATTCTTGG
ACCCTTCCCTCCCGGAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_o24.b1 MSMg01no367_o24.b1 CHROMAT_FILE:
MSMg01no367_o24.b1 PHD_FILE: MSMg01no367_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:14 2005
         (487 letters)



>mm_chr2_123026799_123027685
          Length = 887

 Score =  934 bits (483), Expect = 0.0
 Identities = 483/483 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaagtgtctcttcctttagtgcccatgttcttactgatgctttagtctatattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaagtgtctcttcctttagtgcccatgttcttactgatgctttagtctatattg 264

                                                                       
Query: 65  tttaaactctgtattgttagatgcctctcattctaaagtctttccagcctcactttcatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaactctgtattgttagatgcctctcattctaaagtctttccagcctcactttcatc 324

                                                                       
Query: 125 ttattagctacagatgccacagctactctgtgtgaggtatgaccaacttgacacagatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttattagctacagatgccacagctactctgtgtgaggtatgaccaacttgacacagatgc 384

                                                                       
Query: 185 catctgacatcttctttctcagtgttctttatttcttgctatctacctttaaccctgtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catctgacatcttctttctcagtgttctttatttcttgctatctacctttaaccctgtta 444

                                                                       
Query: 245 gaagtccctatgtctatcctggaagaaagcagagttaatacaatgtaaatatttgcccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagtccctatgtctatcctggaagaaagcagagttaatacaatgtaaatatttgcccat 504

                                                                       
Query: 305 tcccattggccgatatgttatattgactcttagtttcccctacatcttacttggaattct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcccattggccgatatgttatattgactcttagtttcccctacatcttacttggaattct 564

                                                                       
Query: 365 caaatatattttgtatggatattggagaaaattttacaggctccagcaatcagtcatatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaatatattttgtatggatattggagaaaattttacaggctccagcaatcagtcatatg 624

                                                                       
Query: 425 tttactttcaggtttgccaatgtatcatcaaaggatcttattacctatctgggtcacaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttactttcaggtttgccaatgtatcatcaaaggatcttattacctatctgggtcacaga 684

              
Query: 485 agt 487
           |||
Sbjct: 685 agt 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)