BAC Information

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BAC

Clone NameMSMg01-368F06
Chromosome2 (Build37)
Map Location 36,660,139 - 36,660,690
singlet/doubletsinglet
Overlap genenone
Upstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50
Downstream geneRpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368F06.T7 (MSMg01no368_f06.b1)MSMg01-368F06.TJ (MSMg01no368_f06.g1)
ACCAG475581AG475582
length745738
length of high quality
(start - end)		556 (46 - 601)543 (68 - 610)
definitionCHROMAT_FILE: MSMg01no368_f06.b1 PHD_FILE: MSMg01no368_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:44 2005CHROMAT_FILE: MSMg01no368_f06.g1 PHD_FILE: MSMg01no368_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAACCTGTTCAGTGAGAAAGGTTATAGATCCAGGTCTGACTTGA
ATAAAAGCTCTCTTTGCTATATTACATTGGACTGGCACTTCTTAGAGTTC
TTCTGAGCTTCCTGGGAACTGGGCATAACATCTTGGGGACTTGTCTGGGA
TTCTCCAGCAGATCTCTGGAATTTGCAATCTGGAAAGTCTAGTGCCAGTG
AGCGAGTGTGGTGGTGAGTGTCAGCATTTCTGTGTTTCTGTGCTGTTTAT
GTCTGTTCTGTCTAGCCATACTTTTGGCATCAGAAAAAGCCCCAATGTAT
CAGTGTGAGTTGCAAGGAGGGGCTAATAGCAGACATGCTGGAGAGTCACA
GCCACAGGAGTCAGGAAGATGTTCCTGGCTCCAGGATGGATGAGGTACCC
ACCCATCAGTTGGAGGAATTTGTGTTCAAGGAGAGGCCTTGTCACATTCT
GCTTTGGTATTCATCTCTCTTCCTTTCAGAGGCAAGAATTTGTGAGCTCT
AGTGCTTGGATTTACTTTTGTTTCCAGTCATGACATTGCTATTTCGTGTG
TGTGGGTTTGTCTGTATTGCTTCTGGNAGTATTTAGTTTCATGTTATACT
GGACTGTGATGGACATGATGGAACGGGGTAACTCTCACTCTCTTCACTCC
CACGCCCTCCAAATTGTTTTGACCACTTTTAAGAAGTAAAAATCG

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCATGAATGGGT
GTTGCATCTTGTCGAATGCTTTTTCATCATCTAACGAGATGATCATGTGG
TTTTTGTCTTTGAGTTTGTTTATATAAGGATTACATTGATGGATTTCCAT
ATATTAAACCACCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATG
GATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAA
GTATGTTTGCATCGATATTCATAATGGAAATTGGTCTGAAGTTCTCTATC
TTTGTTGGATCTTTCTGTGGTTTAGGTAGTCTGTTAGTCTATGCCTTTTT
ATTGGGGAATTGAGTCCATTGATATTAAGAGATATTAAGGAAAAGTAATT
GTTGCTTCCTTTTATTCTTGTTGTTAGACTTGGCATTCTGTTCTTGTGGC
TGTCTCCTTTTTGGTTTGTTGAGGGATTACTTTCTTGCTTTTACTAGGTT
GTGATTTCTGTTCTTGGATTGTTTTTTTTCTGGTATTATCCTTTTAAGGG
CTGGATTCGTGGAAAGATAATGTGTGAATTTGGGTTTGTCGTGGAACACT
TTGGGTTCTCCATCTATGGAATTGAAAGTTTGGCTGGGAAAGAACCTGGG
CTGGCATTTGTGTCTTCTATAGCCCGTATAACATTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_f06.b1 MSMg01no368_f06.b1 CHROMAT_FILE:
MSMg01no368_f06.b1 PHD_FILE: MSMg01no368_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:44 2005
         (556 letters)



>mm_chr2_36659935_36660890
          Length = 956

 Score = 1013 bits (524), Expect = 0.0
 Identities = 545/552 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaacctgttcagtgagaaaggttatagatccaggtctgacttgaataaaagct 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattcctaacctcttcagtgagaaaggttatagatccaggtctgacttgaataaaagct 697

                                                                       
Query: 65  ctctttgctatattacattggactggcacttcttagagttcttctgagcttcctgggaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctctttgctatattacattggactggcacttcttagagttcttctgagcttcctgggaac 637

                                                                       
Query: 125 tgggcataacatcttggggacttgtctgggattctccagcagatctctggaatttgcaat 184
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 636 tgggcataacatcttggggacttgtctgggattctccagcagatctccagaatttgcaat 577

                                                                       
Query: 185 ctggaaagtctagtgccagtgagcgagtgtggtggtgagtgtcagcatttctgtgtttct 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 576 ctggaaagtctagtgccagtgagcaagtgtggtggtgagtgtcagcatttctgtgtttct 517

                                                                       
Query: 245 gtgctgtttatgtctgttctgtctagccatacttttggcatcagaaaaagccccaatgta 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 516 gtgctgtttatgtctgttctgtctagccatacttttggcaccagaaaaagccccaatgta 457

                                                                       
Query: 305 tcagtgtgagttgcaaggaggggctaatagcagacatgctggagagtcacagccacagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcagtgtgagttgcaaggaggggctaatagcagacatgctggagagtcacagccacagga 397

                                                                       
Query: 365 gtcaggaagatgttcctggctccaggatggatgaggtacccacccatcagttggaggaat 424
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 396 gtcaggaagatgttcctggctccaggatggatgaggtacctacccatcagttggaggaat 337

                                                                       
Query: 425 ttgtgttcaaggagaggccttgtcacattctgctttggtattcatctctcttcctttcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 336 ttgtgttcaaggagaggccttgtcacattctgctttggtattcatctctcttcttttcag 277

                                                                       
Query: 485 aggcaagaatttgtgagctctagtgcttggatttacttttgtttccagtcatgacattgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aggcaagaatttgtgagctctagtgcttggatttacttttgtttccagtcatgacattgc 217

                       
Query: 545 tatttcgtgtgt 556
           ||||||||||||
Sbjct: 216 tatttcgtgtgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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