BAC Information

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BAC

Clone NameMSMg01-368I21
Chromosome2 (Build37)
Map Location 19,586,148 - 19,586,613
singlet/doubletsinglet
Overlap genenone
Upstream geneCommd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1
Downstream geneLOC667564, LOC100041302, LOC433406, LOC654360, LOC667609, Etl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368I21.T7 (MSMg01no368_i21.b1)MSMg01-368I21.TJ (MSMg01no368_i21.g1)
ACCAG475751AG475752
length762767
length of high quality
(start - end)
523 (41 - 563)466 (76 - 541)
definitionCHROMAT_FILE: MSMg01no368_i21.b1 PHD_FILE: MSMg01no368_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:01 2005CHROMAT_FILE: MSMg01no368_i21.g1 PHD_FILE: MSMg01no368_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATGCGCGGAATTCA
CAAGGGAGTACTTTCAAATGGCCAAGAAGCATATAAAGAAATATTCAACA
TCCTTAGTCATCATGGAAATGAACATCAAAATGACCCTGAGATTCTTCCT
TATACCAATCAGAATGGCTAAGATCAAAAACTCAGTTGACAGCACATGTT
GGCAAGAATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGC
AAACTGGTACAACCATTCTGGAAGTCAATCTGGAGGTTCTTCAGAAAATT
GGAAATAGATCTACTTGAAGACCCAACTATACCACTTTTGGTCATATACC
CAAAAGATGTCCCACCATGCCATAGGGGCACATCCTCCACTGTGTTCATA
GCACCCTTATTTGTCATATCCCAAAGCTGGAAACAACCCAGATGTTCCAC
AGTGGAAGAATGGATACAGAAAACAATGGAATACTATTTAGCTATTAATA
ATGAAGACATCATGAATTTTGCTGGCAAATCGATGGAACTGGAAAGTATC
ATCCTGAATCAGGTAACTCAGACCCAAAAGTACATGTATAGTATGTATTC
ACTATTAAATGGATATTAGCCCAAAACATACCGAAATACCAGGATACAAT
CCCCNGAACTCCCGAAGATTACCAGATGAAGCGCCCCATTGAAGAGGCTT
CATCCCACTTGGAAGGGAGAAAAAGCTTACCTGTGGGGAAAGAGGAACCT
TTTGTGAAAAAA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGTTATCAGATCACTCTTCGTAA
AATATAATCCAAGTTCTCACAATTGAAATTTCTAAATAAATGGTCAGTTT
GTATAGAAAAATGTAAGGCAAACAAATTAATTGCTTTAGATGGAATTCCT
TAAGGATTTGTGTGCCTATAGAGAAGAACTTAACTTGGTTTAATCTTCCT
GCATTGCACACCCCCTAGGAGGTGCGGGGTTCTGCTGGACTGGGTCTTTT
GCTGTGAAACTCAGTGGGTGGCTGAGAAGTGTCTGTACTACACGGGGTCT
CAGCTTCCTGGAACCTCCCTCCACCAGCTTCCCTCTTATGTCCCTGACAA
ACATTCTGGTTTCTCACAATTGTCACTCTCTGTTCCTAACTCCCCATTGT
GATGTCTTATATTGGTTAGAGACATTTGACTTCATTAGAATTAACGAATT
AACTGGGTTTTACTTTTTCTAATCTGGGACAGGGGGCTGCCCTGTGAGTC
ACATGCTTAAACTTTAGTTTTGCCCCCCACTCCCTTTACCTAATCTTTGA
TAGCTGTTGATGGGATTGTGGNTTTTGGCCTTGAAAAGATCCCTGAAAGG
TTGGCTGCCAGGCCCAATTTTAATGCAAAAAGTGGGTGTAACAATCCTCA
AAATAACCCCTTTTGTTCCAAAAAGCCAAAGGCTTTTGTTCCTTCCTTGG
GAAATAAAACTTCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_i21.g1 MSMg01no368_i21.g1 CHROMAT_FILE:
MSMg01no368_i21.g1 PHD_FILE: MSMg01no368_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:01 2005
         (466 letters)



>mm_chr2_19585948_19586813
          Length = 866

 Score =  870 bits (450), Expect = 0.0
 Identities = 462/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgttatcagatcactcttcgtaaaatataatccaagttctcacaattgaaatttctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgttatcagatcactcttcgtaaaatataatccaagttctcacaattgaaatttctaa 260

                                                                       
Query: 61  ataaatggtcagtttgtatagaaaaatgtaaggcaaacaaattaattgctttagatggaa 120
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaatggtcggtttgtatagaaaagtgtaaggcaaacaaattaattgctttagatggaa 320

                                                                       
Query: 121 ttccttaaggatttgtgtgcctatagagaagaacttaacttggtttaatcttcctgcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccttaaggatttgtgtgcctatagagaagaacttaacttggtttaatcttcctgcatt 380

                                                                       
Query: 181 gcacaccccctaggaggtgcggggttctgctggactgggtcttttgctgtgaaactcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacaccccctaggaggtgcggggttctgctggactgggtcttttgctgtgaaactcagt 440

                                                                       
Query: 241 gggtggctgagaagtgtctgtactacacggggtctcagcttcctggaacctccctccacc 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtggctgagaagtgtctgtgctacacggggtctcagcttcctggaacctccctccacc 500

                                                                       
Query: 301 agcttccctcttatgtccctgacaaacattctggtttctcacaattgtcactctctgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcttccctcttatgtccctgacaaacattctggtttctcacaattgtcactctctgttc 560

                                                                       
Query: 361 ctaactccccattgtgatgtcttatattggttagagacatttgacttcattagaattaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaactccccattgtgatgtcttatattggttagagacatttgacttcattagaattaac 620

                                                         
Query: 421 gaattaactgggttttactttttctaatctgggacagggggctgcc 466
           ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 gaattaactgggttttactttttcttatctgggacagggggctgcc 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)