BAC Information

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BAC

Clone NameMSMg01-368P10
Chromosome2 (Build37)
Map Location 40,668,163 - 40,668,690
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368P10.T7 (MSMg01no368_p10.b1)MSMg01-368P10.TJ (MSMg01no368_p10.g1)
ACCAG476065AG476066
length7311,419
length of high quality
(start - end)
523 (44 - 566)---
definitionCHROMAT_FILE: MSMg01no368_p10.b1 PHD_FILE: MSMg01no368_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:33 2005CHROMAT_FILE: MSMg01no368_p10.g1 PHD_FILE: MSMg01no368_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTCATGATCCTCTATATCTGAATGAATATAAGCTTGCTTTTTAAAA
ATAAAATAAAATAAAATAAAATAAAGAAGAAGCTGGGTGTAGTGGCATGC
ACCTTTAATTCCAGTGGCTGCAGGGCAGAGGAACTTTCATCTATTTGAGT
TAAATACCACCCAGGCCTACATGGTGAGTTCCAACATGGCCAGAGCTGGA
CAATGAGAACCTGTCTCAAACAAACAAGTAAAGATTATAATTTGATGACC
AAAAGAGATTGACTACATTTGTTTATTATTTACTTTTAGTGATTTAATGT
CAACTACTACAGATACATTGGTTCTCTGTTCAGAAAATTTGCTTTTCTTT
TAATTTAAATATTATTAAGAAGTAAATTTTTGTACTGCCCCAAGATTACT
AAGTATCAAATTGACCGAGCCTTTGGGTTACTGTGCATAACTGTACAGAA
GTGAAGCTAGCATTAAACTCTAAGCATGGAATTCTAAGTGAGTAAAATGT
TTGCCTCATGCATAGATAACTTCCCAGTATCCCCTTAACTTGCGATGTAG
AGATGCATAGTTATATTCTCACATATGCAATAGAGAGGCCAGAGGAACAG
AAGTTCTAGGTCATACTCAGCAATTTACCAAGCTTTATGGAATACTGTGC
TAAATGAGACTATTTGTCAAATCAAACCAAA
TTTGGTGTGTGTCCTCATGGCCANNCCCGACCTCTTTCCTTCTCCAATAT
CATACTGGTTGTAGACTTTATTTTTATGTGTGTCTCTCCTGGGAATGTTC
TCNTGTGGGATGGAGCTNGAGCGGAAGCAGGTGGAGTACAATGACATATT
TCATTAAACTATCAATCTTACCACATGTTAGTACTCCAGGCCTTCGATGT
TCTATTGAGGTTAGTATGGCCAGTCGGAAGAATATGATTNTATACTATTA
AATCATATTCTGCTACGTTCTATCTTCCTCTGATTGTACTATTGAGCGTA
TCATAATAATCANTGTAGCTATTTCTATGGCGTCGCTACGAGTGGTCTCG
TTCCTGCGCGTTACAATCTTGTTAGTGTGTATATGGCAGAGTCTCAAGAG
TACAGAATAAGGAAGAGAGTGAGCGTCCATACCANATGAGAACAGCGACA
TNAGACAAGTAGTAAGCGCACTTGATGATGTGTATAATAAGATTGAGAGG
GGTCCGAGAGTGAAGTCCTAGTGGAGAGAGAGGGAGAGTATAGTAGCGAG
CTTATGGTGAGCTGGTAGAATAGAGATCCTNACTTAACAACTNACTGAAA
TCCACTNAATAGTACATACAATATATCATTCGCTATAGACGATCTTATCC
ATCCCTCTGTAGCTCGNTGAAGACTATGTGGATGCTCAGTATCNCATATA
TATCCTACTACACCTATATTATGATAACTACTATCAATGTCACACACGTA
CGCTAAGATGCTAGATAGTTACGAGAAATAAGAATATCCTCTACTACCAT
CTGACTAGACAATACACACTCCACTACCGTCATACATACGTACTGTATGA
ACTCAATCCTGCGTTGTCCTCGTTCTGTCGATATACTCTTGACGCATGCG
ATAGAGATGTCAGGAGAGATCATATGTATGAGTACAGTACTCTAGCGGCG
CTAATATGTCGTCTCTTCCTGTGCCGCGTGTTGGCTGCTCATCTTCATAT
ATGGAAGCAGTTATGCAAACATTACGATATGAGACACGAGCGCTTATATA
ATTTACGTCATAGAGAGCGACATAGACCTCAGCGAGCTTGTCTCTAAACC
ACACGACGTTAGGAACATATAGATCTATACAAGATACACTAATAGTAGGT
CTAAGTGTGAAGAGCACTAGTGTATGGTGCGGCGAGTAGTGTACACACTC
AACGTCTATATAATCGTAGTATATCAGTCATCTACCATCAGTAGATACCG
CGCGACATCCATATAGATATATAACACTTTACTATTATATAGAATGTACG
CACAGCACACGTTCTCTAAGATCTACGCAAATGTACGCACTCACTTATAA
TCCGACATACGCTGCCAACGCATATGACCATTACGTAAGCGTCATCTNTC
ACACGTCGAGATGTAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_p10.b1 MSMg01no368_p10.b1 CHROMAT_FILE:
MSMg01no368_p10.b1 PHD_FILE: MSMg01no368_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:33 2005
         (523 letters)



>mm_chr2_40667897_40668819
          Length = 923

 Score =  942 bits (487), Expect = 0.0
 Identities = 514/529 (97%), Gaps = 11/529 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcatgatcctctatatctgaatgaatataagcttgcttttta---------- 54
           ||||||||||| |||  |||||||||||||||||||||||||||||||||          
Sbjct: 794 gaattcactcaagat-ttctatatctgaatgaatataagcttgctttttaaaaataaaat 736

                                                                       
Query: 55  aaaataaaataaaataaaataaaataaagaagaagctgggtgtagtggcatgcaccttta 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaaataaaataaaataaaataaaataaagaagaagctgggtgtagtggcatgcaccttta 676

                                                                       
Query: 115 attccagtggctgcagggcagaggaactttcatctatttgagttaaataccacccaggcc 174
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 attccagtggctgcggggcagaggaactttcatctatttgagttaaataccacccaggcc 616

                                                                       
Query: 175 tacatggtgagttccaacatggccagagctggacaatgagaacctgtctcaaacaaacaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tacatggtgagttccaacatggccagagctggacaatgagaacctgtctcaaacaaacaa 556

                                                                       
Query: 235 gtaaagattataatttgatgaccaaaagagattgactacatttgtttattatttactttt 294
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ataaagattataatttgatgaccaaaagagattgactacatttgtttattatttactttt 496

                                                                       
Query: 295 agtgatttaatgtcaactactacagatacattggttctctgttcagaaaatttgcttttc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agtgatttaatgtcaactactacagatacattggttctctgttcagaaaatttgcttttc 436

                                                                       
Query: 355 ttttaatttaaatattattaagaagtaaatttttgtactgccccaagattactaagtatc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttttaatttaaatattattaagaagtaaatttttgtactgccccaagattactaagtatc 376

                                                                       
Query: 415 aaattgaccgagcctttgggttactgtgcataactgtacagaagtgaagctagcattaaa 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaattgaccgagcctttgggttactgtgcataactgtacagaagtgaagctagcattaaa 316

                                                            
Query: 475 ctctaagcatggaattctaagtgagtaaaatgtttgcctcatgcataga 523
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctctaagcatggaattctaagtgagtaaaatgtttgcctcatgcataga 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)