BAC Information

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BAC

Clone NameMSMg01-369F02
Chromosome2 (Build37)
Map Location 87,522,460 - 87,687,918
singlet/doubletdoublet
Overlap geneOlfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1
Upstream geneOlfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135
Downstream geneOlfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369F02.T7 (MSMg01no369_f02.b1)MSMg01-369F02.TJ (MSMg01no369_f02.g1)
ACCAG476335AG476336
length769803
length of high quality
(start - end)
374 (37 - 410)296 (76 - 371)
definitionCHROMAT_FILE: MSMg01no369_f02.b1 PHD_FILE: MSMg01no369_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:00 2005CHROMAT_FILE: MSMg01no369_f02.g1 PHD_FILE: MSMg01no369_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,522,460 - 87,522,791)(87,687,623 - 87,687,918)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATT
TTCTTAATACTTATTAAGTAGTAAGTATCCATGTAGCTTTTTAAGCATCC
TTAATTCTATATTTTTACCCTAAGTACCATGGCTGCTTTGCTACTTTCCC
CTCTGCTCCCTCTGTCTATCTACATCTTGCCCCTACTATTATCCTTCCTA
CTAATAACATATTGTGTTTTCCATATACTCCCTTAAAATATGGCTCATTC
CTACCTGTTATACCTTTGGGGTTTCTCTGGATTCTATAGCTATCCTAAAT
TAAACAAAACAAACTAAAAGCACCAAACATAGGCCTCTTTATAGCAATAT
CCATCTATAAGTTTTTTTTCCTCTTAATTAATTTATTAATTCATTTTACA
TCCTGACTGTATTCACCCCTCCTTTCATTCCATCCCCTTCCTCTCTGAGA
GGCTGGATGCTTTATCCCTCTCTTGGGTATCCCCTTTATTAGAACATTAA
TTCTCTTCAGGGTTAGGCACCCCCTCTCCTATTGACCCCATACTATTTAC
TCTTTATGTTTATCTTATTCTCTCTTATCTTTATCATTTTTACCCCTCCC
CCCTCCGTTTTTCTCCCTTTTTTCCCCCTCTTCCTTATTTTTATTTATTT
CTCTCCTTTTTTATTTTAATTTCCTTCTTTTTTTTTCTTTTTATTTTTTT
TTTTCTTTTTCTTTTCTTATCTTTTATATTACCTTCTTTATATTTTTCTA
TTTTTTTTTTTTTTTTTTG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGGCAATCAGTAGTGGGTG
GATTGGTAAGCAGGGAGAGTGGGGATGAGATAGGGGGTTTCAGAGGGGAA
ACTAGGGAAGTGGGTAATATTTGAGATGTAAATAAAGAAAATACCTAACA
AAAATAAATAAATGTAGAATAATTATTCTATCAAAATTTATACTTAATAA
ATATAGTTCTATAAAGGACAGAACCAAATATGAAATTTACAAATATGTTA
ATACTTAGTAAGTATCATTCTATTATTTATAATGTATGATCAATAATTTT
CAATACTTTGCGAATATCTGAACAAAGAGATATTACACAAATTAAAAATA
GTTATTCAGAATTTTTGTACGGATATATCATTGAAGATAGGTTATTTGTA
CTTATACTCTTATACATATCCTACTTTTGGAAAATCTCATACCCTATCCA
CACATATTATTCTTACTTGTTGAGCATCTACTCCCCCTAAATCATTCATG
ATTATTTTGCACCTTTTTTTCCGATCTCCTGTTTTACTTGCTTTTTATCT
GTCCTTTGTTTCGATCCTATTTCTTTTCTTCTTTCTTCTTTATTCTGTTC
TCTCTTCTTTATCTTTCATATTCCCCTCCTTTTTCCTTTATCTCTCCTTT
TCCCCTCTGCTATTCGGGTTCTTTCCTCTACCTTCACTTTCTTTCTTTTC
TTTTTTTTTTCCTCCTCCCCCTTTTCTTTGTCGCACTTCCTTGTTTTCCT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_f02.b1 MSMg01no369_f02.b1 CHROMAT_FILE:
MSMg01no369_f02.b1 PHD_FILE: MSMg01no369_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:00 2005
         (374 letters)



>mm_chr2_87522219_87522992
          Length = 774

 Score =  634 bits (328), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 42  tccatgtagctttttaagcatccttaattctatatttttaccctaagtaccatggctgct 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tccatgtagctttttaagcatccttaattctatatttttaccctaagtaccatggctgct 301

                                                                       
Query: 102 ttgctactttcccctctgctccctctgtctatctacatcttgcccctactattatccttc 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttgctactttcccctctgctccctctgtctatctacatcttgcccctactattatccttc 361

                                                                       
Query: 162 ctactaataacatattgtgttttccatatactcccttaaaatatggctcattcctacctg 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctactaataacatattgtgttttccatatactcccttaaaatatggctcattcctacctg 421

                                                                       
Query: 222 ttatacctttggggtttctctggattctatagctatcctaaattaaacaaaacaaactaa 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 422 ttatacctttggggtttctctggattctatagctatcctaaattaaacaaaacaaacaaa 481

                                                                       
Query: 282 aagcaccaaacataggcctctttatagcaatatccatctataagttttttttcctcttaa 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aagcaccaaacataggcctctttatagcaatatccatctataagttttttttcctcttaa 541

                                           
Query: 342 ttaatttattaattcattttacatcctgactg 373
           ||||||||||||||||||||||||||||||||
Sbjct: 542 ttaatttattaattcattttacatcctgactg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no369_f02.g1 MSMg01no369_f02.g1 CHROMAT_FILE:
MSMg01no369_f02.g1 PHD_FILE: MSMg01no369_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:01 2005
         (296 letters)



>mm_chr2_87687287_87687982
          Length = 696

 Score =  518 bits (268), Expect = e-151
 Identities = 289/296 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacaggcaatcagtagtgggtggattggtaagcagggagagtggggatgagataggg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 632 caggacaggcaatcagtagtgggtggattggtaagcagggggagtggggatgagataggg 573

                                                                       
Query: 61  ggtttcagaggggaaactagggaagtgggtaatatttgagatgtaaataaagaaaatacc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gggttcagaggggaaactagggaagtgggtaatatttgagatgtaaataaagaaaatacc 513

                                                                       
Query: 121 taacaaaaataaataaatgtagaataattattctatcaaaatttatacttaataaatata 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 taataaaaataaataaatgtagaataattattctatcaaaatttatacttaataaatata 453

                                                                       
Query: 181 gttctataaaggacagaaccaaatatgaaatttacaaatatgttaatacttagtaagtat 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 452 gttctataaaggacagaaccaaatatgaaattcacaaatatgttaatacttagtaagtat 393

                                                                   
Query: 241 cattctattatttataatgtatgatcaataattttcaatactttgcgaatatctga 296
           ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 392 cattctattacctataatgtatgatcaataattttcaacactttgcgaatatctga 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)