BAC Information

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BAC

Clone NameMSMg01-369J18
Chromosome2 (Build37)
Map Location 44,900,773 - 44,901,133
singlet/doubletsinglet
Overlap geneZeb2
Upstream geneArhgap15, Gtdc1
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369J18.T7 (MSMg01no369_j18.b1)MSMg01-369J18.TJ (MSMg01no369_j18.g1)
ACCAG476553AG476554
length739813
length of high quality
(start - end)
374 (41 - 414)146 (77 - 222)
definitionCHROMAT_FILE: MSMg01no369_j18.b1 PHD_FILE: MSMg01no369_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:23 2005CHROMAT_FILE: MSMg01no369_j18.g1 PHD_FILE: MSMg01no369_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTTTTTTCTTTACAGGAAATGTATATCCTTGTAAGTCTATCGTCTTATT
TAGTTTCTATATTATAGGTCTAGCTAATCTAAAACCATTTCCTTATCATC
TGGCATGCTAACAGTACCGTCATCAAAACAAACAATCTGTTAATATAACT
CAGGTTGTGGAAAGCAGAGTAGGGTGTGCTATATTTAATATGCAGACAAC
AGGGCTGAGATCCTTCTTGAGGTACTTGGTCAGGGAAGGCCTCTTGGGTT
GATTCTGAAGGGTCTGGATTGCCTTCTAAATTCTAGGAGCCATTCAGGTC
TAGTTTTAGTACTAAAATCATTCACACACACACACACACACACACACACA
CACATACACACACACACATACACTCACACACACTTACATACTCACACACA
CACACACTCTCACACACACATTTTCTCACTCACTCTTTCTCCTCAAGAAA
GTACTGTATGCTTGTTTTGTGTTAACTTTCACCTCTCAATTTTCCATTTT
GTTCCTGTCGTTTCTTTTTCTTCCCTCCCCTTGTGTTTTTTTCTTCTTTT
TTCCTCTCTTGCTAATTATTTGTATATAAACTCCTATTTCTTTATTTCCT
CCATTTTTTACGTCTATTTCCTTTTTATTATTCAATATTCTTGTAATTTT
CCCCATTCTCTTTTTTTATTCCTTTATATTCTATATATG
TCGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCAGAAGTAAAATATTTATTTG
GTTCAAGGTGTGCCATAGAATTTGTCCATTTGTATTTTGTTATTAGCAGG
TCAAAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTTNNTTNTTTTNTATNNTGTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTTTTGTCTTCCTTTTGTTTT
TTGTTTTTTTTTTTCTTTTTTTTTTTCTTGCGCCCTTTTTTGCCGTTGTT
CTTGTTTTCTTTTTTTTTTTTCCCTTTTTTTTTGTTTTGTTTTGTTGTTT
GTCTTTCCTCTCCCTTTCTTTCTTTCCCCCCTCGCTTCTTTTTTTTTTTT
TTTTTTTTTCCTCTTTTTCTTTTCTTTTTTTTTTTTTTTCTCGCCTTCTT
TTCTTTTTTTCTTTTCTCTTTTTTCCTTTTTTCTTTCCTCTTCGCTTCCG
TTTCACTCTTCCTTTTTCCCTTCTTTTTTTTTCCTTATTTTCTTTTTTTT
TTTTCTTTTTTTCTCTTTACTTCTTATTCTATTCTTTTTTCTCCTTCTTT
TTCTTCTCCTACTTCTTATCTTTTCTCTTTTTCTTTTCATTTTTATGTTC
TTTTTTTTTTTTTCCCTTTTACACTTCTTTTCTTTTCTCCCCTCTTTTCT
TTTATCTTCTTTTCCCTTTTTTTTTCTTCCGCCCCTTTTCTTCCCTCTTT
ACTAACTCGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_j18.b1 MSMg01no369_j18.b1 CHROMAT_FILE:
MSMg01no369_j18.b1 PHD_FILE: MSMg01no369_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:23 2005
         (374 letters)



>mm_chr2_44900570_44901344
          Length = 775

 Score =  652 bits (337), Expect = 0.0
 Identities = 355/361 (98%), Gaps = 1/361 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattca-tttttttctttacaggaaatgtatatccttgtaagtctatcgtcttattta 62
           |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattttttttttttacaggaaatgtatatccttgtaagtctatcgtcttattta 263

                                                                       
Query: 63  gtttctatattataggtctagctaatctaaaaccatttccttatcatctggcatgctaac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtttctatattataggtctagctaatctaaaaccatttccttatcatctggcatgctaac 323

                                                                       
Query: 123 agtaccgtcatcaaaacaaacaatctgttaatataactcaggttgtggaaagcagagtag 182
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 324 agtaccgtcatcaaaacaaacaatctgttaatataacttaggttgtggaaagcggagtag 383

                                                                       
Query: 183 ggtgtgctatatttaatatgcagacaacagggctgagatccttcttgaggtacttggtca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 ggtgtgctatatttaatatgcagacaacagggctgagatccttcttgaggtgcttggtca 443

                                                                       
Query: 243 gggaaggcctcttgggttgattctgaagggtctggattgccttctaaattctaggagcca 302
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggaaggccacttgggttgattctgaagggtctggattgccttctaaattctaggagcca 503

                                                                       
Query: 303 ttcaggtctagttttagtactaaaatcattcacacacacacacacacacacacacacaca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcaggtctagttttagtactaaaatcattcacacacacacacacacacacacacacaca 563

            
Query: 363 c 363
           |
Sbjct: 564 c 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 775
Length adjustment: 9
Effective length of query: 365
Effective length of database: 766
Effective search space:   279590
Effective search space used:   279590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)